Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0911 Acco02g0771 Accr2g02934 Adu06g02294 Aed9g1134 . Ahy16g2415 Ahy6g2071 Aip06g02748 Alju01g0773 . . Apr4g1575 Arst6g02968 Bach8g01410 . Bva04g01885 . Cca07g00779 Dere01g2033 Dod01g1830 Enph2g0606 Glsi02g0039 . Gma16g00467 Gso19g0844 Gso16g0425 . . Lal10g0175 . . Lan3g0840 Lapu1g00534 . Lele05g0616 Lele06g0431 Lele07g0646 Lele08g0443 Lja1g1721 . . . Mibi02g0686 . . Phco2g00969 . Psa3g4063 . Pumo5g02192 Rops8g02363 Seca2g03300 . Ssu4g1883 Sto8g1653 . . . Vian2g01498 . Vimu6g03639 . Vivi6g03239 .
Pvu1g0912 . . . . . . . . . . . . . . . . Car03g00588 . . . . . . . . . Lal8g1288 . . . . Lan3g1638 . . . . . . . . . . . . Phac1g01192 Phco2g00970 . Psa3g3663 Pste5g00758 . . . Spst1g00281 . . . . . . . . . . .
Pvu1g0913 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0914 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa3g00603 . . . . . . . . . . Phac1g01196 Phco2g00971 . Psa3g3712 Pste5g00438 . . . Spst1g00282 . . . . . . . . . . .
Pvu1g0915 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0916 . . . . . . . . . . . . . . . . . . . . . . . . . . Lal8g1289 . . . . Lan3g1636 . Lasa3g00604 . . . . . . . . . . Phac1g01198 Phco2g00972 . Psa3g3713 Pste5g00434 . . . Spst1g00283 . . . . . . . . . . .
Pvu1g0917 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g00974 . . . . . . . . . . . . . . . . . .
Pvu1g0918 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lan6g1755 . . . . . . . . . . . . . . Phco2g00975 . . . . . . . . . . . . . . . . . .
Pvu1g0919 . . . . . . . . . . . . . . . . . . . . . . . . . . Lal8g1307 . . . . . . Lasa3g00605 . . . . . . . . . . Phac1g01203 Phco2g00976 . Psa3g3715 Pste5g00427 . . . Spst1g00284 . . . . . . . . . . .
Pvu1g0920 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu1g0911 Chr1 15904586 15912196 -
Acco Acco02g0771 Chr02 5451001 5456670 +
Accr Accr2g02934 Chr2 65211249 65216798 -
Adu Adu06g02294 Chr06 94915154 94926738 -
Aed Aed9g1134 Chr9 8463776 8471074 -
Ahy Ahy16g2415 Chr16 131715265 131726931 -
Ahy Ahy6g2071 Chr6 100457526 100468936 -
Aip Aip06g02748 Chr06 118028793 118039562 -
Alju Alju01g0773 Chr01 5747394 5753183 +
Apr Apr4g1575 Chr4 17358823 17367643 -
Arst Arst6g02968 Chr6 94129046 94140628 -
Bach Bach8g01410 Chr8 9705659 9712086 -
Bva Bva04g01885 Chr04 19284168 19289926 +
Cca Cca07g00779 Chr07 12306314 12316196 -
Dere Dere01g2033 Chr01 34341044 34347086 +
Dod Dod01g1830 Chr01 52869834 52878413 +
Enph Enph2g0606 Chr2 4668160 4675304 +
Glsi Glsi02g0039 Chr02 322605 330103 -
Gma Gma16g00467 Chr16 5034572 5043204 -
Gso Gso19g0844 Chr19 34209434 34222306 -
Gso Gso16g0425 Chr16 4910485 4919289 -
Lal Lal10g0175 Chr10 2051613 2059638 +
Lan Lan3g0840 Chr3 15992848 16005871 +
Lapu Lapu1g00534 Chr1 17122005 17129755 -
Lele Lele05g0616 Chr05 3632283 3636275 +
Lele Lele06g0431 Chr06 2662198 2667880 +
Lele Lele07g0646 Chr07 3688287 3692303 +
Lele Lele08g0443 Chr08 2722148 2727771 +
Lja Lja1g1721 Chr1 19140219 19146732 -
Mibi Mibi02g0686 Chr02 6689082 6700660 +
Phco Phco2g00969 Chr2 12404956 12411685 -
Psa Psa3g4063 Chr3 379780724 379782869 -
Pumo Pumo5g02192 Chr5 59082804 59092430 -
Rops Rops8g02363 Chr8 54759587 54768760 +
Seca Seca2g03300 Chr2 101182697 101191888 +
Ssu Ssu4g1883 Chr4 34662289 34674900 -
Sto Sto8g1653 Chr8 10623068 10628134 -
Vian Vian2g01498 Chr2 31017974 31025258 -
Vimu Vimu6g03639 Chr6 34083745 34090591 +
Vivi Vivi6g03239 Chr6 122594839 122601590 -
Pvu Pvu1g0912 Chr1 15930050 15932342 -
Car Car03g00588 Chr03 27966398 27969123 -
Lal Lal8g1288 Chr8 15941488 15946628 -
Lan Lan3g1638 Chr3 28377477 28380151 +
Phac Phac1g01192 Chr1 12206454 12208691 -
Phco Phco2g00970 Chr2 12460569 12462219 -
Psa Psa3g3663 Chr3 313137784 313139683 -
Pste Pste5g00758 Chr5 4842135 4846949 +
Spst Spst1g00281 Chr1 3915288 3916974 -
Pvu Pvu1g0913 Chr1 15958144 15959097 -
Pvu Pvu1g0914 Chr1 16003146 16021988 +
Lasa Lasa3g00603 Chr3 51943749 51946869 +
Phac Phac1g01196 Chr1 12251856 12269450 +
Phco Phco2g00971 Chr2 12508109 12528736 +
Psa Psa3g3712 Chr3 320872510 320879491 +
Pste Pste5g00438 Chr5 2877704 2887496 -
Spst Spst1g00282 Chr1 3936451 3942123 +
Pvu Pvu1g0915 Chr1 16015772 16016219 +
Pvu Pvu1g0916 Chr1 16020727 16023807 -
Lal Lal8g1289 Chr8 15976010 15980788 -
Lan Lan3g1636 Chr3 28335920 28366339 +
Lasa Lasa3g00604 Chr3 51948874 51953409 -
Phac Phac1g01198 Chr1 12268869 12271254 -
Phco Phco2g00972 Chr2 12530549 12532956 -
Psa Psa3g3713 Chr3 320878463 320884921 -
Pste Pste5g00434 Chr5 2865190 2866525 +
Spst Spst1g00283 Chr1 3955507 3961265 -
Pvu Pvu1g0917 Chr1 16127269 16132128 +
Phco Phco2g00974 Chr2 12563019 12566601 +
Pvu Pvu1g0918 Chr1 16133249 16142982 -
Lan Lan6g1755 Chr6 28795504 28797969 -
Phco Phco2g00975 Chr2 12568174 12578470 -
Pvu Pvu1g0919 Chr1 16152063 16159258 +
Lal Lal8g1307 Chr8 16139572 16149922 +
Lasa Lasa3g00605 Chr3 52639613 52644205 +
Phac Phac1g01203 Chr1 12321836 12329022 +
Phco Phco2g00976 Chr2 12605589 12612910 +
Psa Psa3g3715 Chr3 321545411 321551440 +
Pste Pste5g00427 Chr5 2818765 2821592 -
Spst Spst1g00284 Chr1 3974358 3980664 +
Pvu Pvu1g0920 Chr1 16259207 16259345 +
Psa Psa3g4063 Chr3 379780724 379782869 -
Pste Pste5g00758 Chr5 4842135 4846949 +