Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1189 . . . . . . . . . . . . Arst3g01928 . . . . . . . . . . . . . . Lal2g0486 Lal9g0440 Lan7g0504 . . . . . . . . . . . . . . . . . . Pste1g03506 . . . . Ssu3g2094 . . . Tsu02g02875 . . . . Vivi5g03350 .
Pvu11g1190 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal2g0494 . . . . . Lasa7g02603 . . . . . . Mepo2g02763 . . Mtr4g2499 . . . . . . . . . Ssu3g2081 . . Trre7g02045 Tsu02g02006 . . . . Vivi5g03364 .
Pvu11g1191 . . . . . . . . . . . . Arst3g01949 . . . . . . . . . . . . . . . . . . . . Lasa7g02605 . . . . . . Mepo2g02766 . . Mtr4g2501 . . . . . . . . . . . . . . . . . . . .
Pvu11g1192 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1193 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1194 . . . . . . . . . Amo13g2086 . . Arst3g01952 . . . . . . . . . . . . . . Lal2g0495 . Lan7g0510 . . . Lasa7g02614 . . . . . . Mepo2g02767 . . Mtr4g2502 . . . . . . . . . Ssu3g2078 . . Trre7g02051 . . . . . Vivi5g03371 .
Pvu11g1195 . . . . . . . . . Amo13g2089 . . . . . . . . . . . . . . . . . Lal2g0496 Lal9g0444 Lan7g0511 . . . . . . . . . . . . . Mtr4g2505 . . . . . . . . . Ssu3g2077 . . . . . . . . . .
Pvu11g1196 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1197 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vivi Vivi5g03364 Chr5 124864710 124868795 +
Vivi Vivi5g03350 Chr5 124554293 124554901 -
Pvu Pvu11g1188 Chr11 17198921 17199795 +
Pvu Pvu11g1189 Chr11 17312779 17313387 -
Arst Arst3g01928 Chr3 22612626 22613240 -
Lal Lal2g0486 Chr2 2935390 2936007 -
Lal Lal9g0440 Chr9 2889851 2890465 -
Lan Lan7g0504 Chr7 3702173 3703119 -
Pste Pste1g03506 Chr1 16428395 16436536 -
Ssu Ssu3g2094 Chr3 68978933 68979544 +
Tsu Tsu02g02875 Chr02 31475869 31476522 +
Vivi Vivi5g03350 Chr5 124554293 124554901 -
Pvu Pvu11g1190 Chr11 17518868 17522461 +
Lal Lal2g0494 Chr2 2974605 2979008 +
Lasa Lasa7g02603 Chr7 535226480 535230284 +
Mepo Mepo2g02763 Chr2 37418144 37422506 +
Mtr Mtr4g2499 Chr4 38545581 38549392 +
Ssu Ssu3g2081 Chr3 68503860 68506861 -
Trre Trre7g02045 Chr7 16201054 16204371 +
Tsu Tsu02g02006 Chr02 19517588 19522513 +
Vivi Vivi5g03364 Chr5 124864710 124868795 +
Pvu Pvu11g1191 Chr11 17718231 17720809 -
Arst Arst3g01949 Chr3 23089692 23091276 -
Lasa Lasa7g02605 Chr7 535275061 535276443 -
Mepo Mepo2g02766 Chr2 37438505 37439893 -
Mtr Mtr4g2501 Chr4 38567547 38568966 -
Pvu Pvu11g1192 Chr11 17759673 17759978 +
Pvu Pvu11g1193 Chr11 17773436 17773867 +
Pvu Pvu11g1194 Chr11 17825156 17832408 -
Amo Amo13g2086 Chr13 33225604 33231216 -
Arst Arst3g01952 Chr3 23147856 23153351 -
Lal Lal2g0495 Chr2 2978411 2985119 -
Lan Lan7g0510 Chr7 3760520 3765330 -
Lasa Lasa7g02614 Chr7 535509994 535513983 -
Mepo Mepo2g02767 Chr2 37444366 37450595 -
Mtr Mtr4g2502 Chr4 38572137 38578765 -
Ssu Ssu3g2078 Chr3 68482917 68489762 +
Trre Trre7g02051 Chr7 16231218 16236764 -
Vivi Vivi5g03371 Chr5 124954492 124959930 -
Pvu Pvu11g1195 Chr11 17970404 17973785 -
Amo Amo13g2089 Chr13 33257405 33260273 -
Lal Lal2g0496 Chr2 2989581 2991586 -
Lal Lal9g0444 Chr9 2919520 2921977 -
Lan Lan7g0511 Chr7 3771237 3773936 -
Mtr Mtr4g2505 Chr4 38602371 38604869 -
Ssu Ssu3g2077 Chr3 68462117 68465445 +
Pvu Pvu11g1196 Chr11 18007371 18008622 +
Pvu Pvu11g1197 Chr11 18009667 18011721 +
Arst Arst3g01949 Chr3 23089692 23091276 -