Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2089 ATGGGAGCATACAGAGCGGACGATGATTACGATTACTTGTTCAAGGTGGTGCTGATCGGAGACTCCGGCGTCGGAAAGTCGAATCTTTTGTCTCGATTCACAAAAAATGAATTCAGCTTGGAATCCAAATCCACCATTGGCGTTGAATTCGCCACTCGCAGCATCCACGTCGATGATAAGATCGTTAAGGCCCAAATTTGGGACACTGCTGGACAAGAAAGATATCGCGCAATCACTAGTGCATATTATCGAGGAGCTGTTGGCGCATTGCTTGTGTACGATGTTACCAGACACGTGACCTTTGAAAATGTGGAAAGATGGTTAAAGGAACTTAGGGATCACACAGATGCCAACATTGTAATCATGCTTGTAGGAAACAAGGCGGATCTTCGGCACCTGCGTGCCGTGAACACTGATGACGCCAAGGCATTTGCCGAGAGAGAAAGCACATTCTTCATGGAAACGTCTGCACTCGAATCCTTGAATGTTGACAATGCTTTCACAGAAGTGCTCACTCAGATCTATCGCGTTGTTAGTCGGAAAACTCTTGAGATTGGAGATGACCCTACTGCCTTGCCAAAGGGGCAAACGATCAATGTCGGTGGTAAGGATGATGTCTCGGCTGTTAAAAAGGCTGGATGCTGCTCTTCATAG 654 0.4679 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIHVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGNKADLRHLRAVNTDDAKAFAERESTFFMETSALESLNVDNAFTEVLTQIYRVVSRKTLEIGDDPTALPKGQTINVGGKDDVSAVKKAGCCSS* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2089 217 ProSiteProfiles small GTPase Rho family profile. 7 178 - -
Amo13g2089 217 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Amo13g2089 217 ProSiteProfiles small GTPase Rab1 family profile. 9 215 - -
Amo13g2089 217 SMART ras_sub_4 11 177 - -
Amo13g2089 217 SMART rho_sub_3 16 173 IPR001806 GO:0003924|GO:0005525
Amo13g2089 217 PANTHER RAS-RELATED PROTEIN RABA1F-LIKE 1 215 - -
Amo13g2089 217 SMART ran_sub_2 19 216 - -
Amo13g2089 217 PRINTS Transforming protein P21 ras signature 14 35 - -
Amo13g2089 217 PRINTS Transforming protein P21 ras signature 37 53 - -
Amo13g2089 217 PRINTS Transforming protein P21 ras signature 55 77 - -
Amo13g2089 217 PRINTS Transforming protein P21 ras signature 117 130 - -
Amo13g2089 217 PRINTS Transforming protein P21 ras signature 152 174 - -
Amo13g2089 217 ProSiteProfiles small GTPase Ras family profile. 8 217 IPR001806 GO:0003924|GO:0005525
Amo13g2089 217 TIGRFAM small_GTP: small GTP-binding protein domain 12 170 IPR005225 GO:0005525
Amo13g2089 217 Gene3D - 6 215 IPR027417 -
Amo13g2089 217 PANTHER DRAB11-RELATED 1 215 - -
Amo13g2089 217 CDD Rab11_like 11 175 - -
Amo13g2089 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 183 IPR027417 -
Amo13g2089 217 SMART rab_sub_5 14 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2089 Amo-Chr13 33257405 33260273 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2089 K07904 - gmx:100781889 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2089 13 33257405 33260273 Amo18g1678 18 33964456 33968433 ECH
Amo13g2089 13 33257405 33260273 Amo13g2089 13 33257405 33260273 ECH