Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03371 ATGTTGTTACGTACTAAGAGGAAAGCGTCAACATTTCCATTCTCCAAAAACCAAAACCAAAACCAAAACCAAAACATCTCTGTTTCTGACTTTCCATTCAACATTATCAATCAATCTCCCAATTCCCACAACCACCGTCTCTCAACACTCAACATGGACACCAACCGCATCTCCCGGCGAACCGAGATCCTCTCCAACCACCTCCGCCATGATCCACCAACAGCCACCACACTCCTCCAACACAACGCCTGCCTATGCTACTCTCCTCCCGAGCTATCTGAATCAAATCACGTAACGTTCGACACGACCGAGATGCGGAAGCTCTTGGACGGTCATAATCTGGAGGATCGCGACTGGCTCTTCGGATTGATGATACAGAGCCGTCTCTTCAACCGGCGGGAAATCGACGGAAGGGTGTTTGTTTCCCCGGATTATAATCAGTCTATGGAGCAACAGCGTGAGATGACCATGAAGCGGATATCGTATCTTTTGGATCGCGGAGTTTTTCGCGGGTGGCTCACCGGTGATGGCCCTCGAGAAGAGTTGAGGAAATTGGCGCTTCATGAGGTTATTGGAATGTATGATCACTCTCTCGCAGTTAAGCTCGGTGTTCATATCTTCTTGTGGGGCGGGGCTGTAAAGTTTCTAGGAACCAAGCGTCACCATGACAAGTGGTTGAGAGCGACTGAAAACTATGAGCTCAAGGGTTGTTTTGCAATGTCTGAGTTGGGCCATGGGAGTAATGTTCGAGGAATTGAAACAATCACTACTTATGATCCAAATACTGGACAATTTGTCATCAATACTCCGTGTGAGTCGGCTCAGAAGTATTGGATCGGTGGTGCTGCAAATCATGCAACACATACTATAGTCTTCTCACAGCTCAACATAAATGGTAGCAATCAAGGGGTGCATGCTTTTATTGCTCAAATCAGGGATTCAGATGGAAACATATGCCCAAATATCCGAATAGCTGAATGTGGTCACAAAATTGGTTTAAACGGGGTTGATAACGGCCGTATCTGGTTTGACAATGTGAGAATACCCAGAGAGAATTTGTTAAATTCCGTGGCTGACGTTTCACCAAGTGGTGAATATTTGAGTGCTATTAAAAATGCCGATCAGAGATTTGGAGCATTCTTAGCCCCTTTGACCTCTGGTCGTGTAACTATTGCTGTCAGTTCTGTTTACATATCCAAGATTAGCTTAGCCATTGCTATAAGATATGCATTGACAAGGCGGGCCTTTTCTATTACACCAAATGGGCCTGAAGTTCTACTACTTGATTACCCAAGCCATCAACAGCGTCTATTACCTTTACTTGCAAAGATATATGCTATGAGTTTTGCTTCAATTGAGCTCAAAATGATGTATGTGAATAGAACGCCTGAGTCAAACAAAGCAATTCATATTGTTTCTAGTGCATACAAGGCAACCTTTACATGGAATAATATGCGTACTCTTCAGGAATGTCGTGAAGCATGTGGGGGACAAGGCGTCAAAACTGAAAATCGTATCGGTCAATTCAAGGGTGAGTTTGATGTGCATTCAACATTTGAGGGGGACAACAATGTTCTGATGCAACAGATAAGCAAGGCACTCCTCGCAGAATACATAGCATGTCAGACAAAAAACAAGCCATTTAAAGGTTTGGGATTAGAACACATGAACAAACCTCTGCCCGTCATCCCATCTAAGTTAACAAGTTCTACCATCAAAAGCAGTGAATTTCAGATTGATCTGTTCCACCTAAGAGAGCGAGATCTATTGAAACGTTTTGCTGAAGAGGTTTCAGAACATCAATCTAATGGAAATAGCAAAGAATACGCCTTTATTCTAAGTTACCAGCTCGCGGAGGACTTAGGCCGAGCTTTCTCTGAACGAGCAATACTTAAAACATTTATAGAGGCTGAGTCAGCTTTACCAGCCGGTTCATTGAAGGATGTCTTAAGTCTGTTAAGATCGTTATACGCCTTGATTAGTGTGGACGAAGACGCTGCCTTTCTCCGATATGGATACTTGTCAACAGAAAATGCTTCTGCAGTGAGGAAAGAAGTTCCAAAACTATGTGCTGAACTTCGACCACATGCACTTGCGTTGGTTAATTCCTTTGGTATTCCTGATGCTTTCTTGAGCCCTATGGCATACAACTGGGTGGAGTCAAATTCTTGGTCTACTGCTCAACATTAA 2190 0.437 MLLRTKRKASTFPFSKNQNQNQNQNISVSDFPFNIINQSPNSHNHRLSTLNMDTNRISRRTEILSNHLRHDPPTATTLLQHNACLCYSPPELSESNHVTFDTTEMRKLLDGHNLEDRDWLFGLMIQSRLFNRREIDGRVFVSPDYNQSMEQQREMTMKRISYLLDRGVFRGWLTGDGPREELRKLALHEVIGMYDHSLAVKLGVHIFLWGGAVKFLGTKRHHDKWLRATENYELKGCFAMSELGHGSNVRGIETITTYDPNTGQFVINTPCESAQKYWIGGAANHATHTIVFSQLNINGSNQGVHAFIAQIRDSDGNICPNIRIAECGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPSGEYLSAIKNADQRFGAFLAPLTSGRVTIAVSSVYISKISLAIAIRYALTRRAFSITPNGPEVLLLDYPSHQQRLLPLLAKIYAMSFASIELKMMYVNRTPESNKAIHIVSSAYKATFTWNNMRTLQECREACGGQGVKTENRIGQFKGEFDVHSTFEGDNNVLMQQISKALLAEYIACQTKNKPFKGLGLEHMNKPLPVIPSKLTSSTIKSSEFQIDLFHLRERDLLKRFAEEVSEHQSNGNSKEYAFILSYQLAEDLGRAFSERAILKTFIEAESALPAGSLKDVLSLLRSLYALISVDEDAAFLRYGYLSTENASAVRKEVPKLCAELRPHALALVNSFGIPDAFLSPMAYNWVESNSWSTAQH 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03371 729 Gene3D - 383 544 - -
Vivi5g03371 729 PIRSF Acyl-CoA_oxidase 81 728 IPR012258 GO:0003997|GO:0005777|GO:0006631|GO:0071949
Vivi5g03371 729 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 146 357 IPR009100 GO:0016627
Vivi5g03371 729 FunFam Acyl-coenzyme A oxidase 576 704 - -
Vivi5g03371 729 Pfam Acyl-CoA dehydrogenase, middle domain 237 346 IPR006091 GO:0016627
Vivi5g03371 729 FunFam Acyl-coenzyme A oxidase 380 544 - -
Vivi5g03371 729 Pfam Acyl-CoA dehydrogenase, C-terminal domain 380 535 IPR009075 GO:0016627
Vivi5g03371 729 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 376 548 IPR036250 GO:0016627
Vivi5g03371 729 Pfam Acyl-CoA oxidase 576 711 IPR002655 GO:0003997|GO:0005777|GO:0006635
Vivi5g03371 729 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 574 712 IPR036250 GO:0016627
Vivi5g03371 729 PANTHER ELECTRON TRANSPORT OXIDOREDUCTASE 90 714 IPR012258 GO:0003997|GO:0005777|GO:0006631|GO:0071949
Vivi5g03371 729 Gene3D - 576 704 - -
Vivi5g03371 729 Gene3D - 236 373 IPR046373 GO:0016627
Vivi5g03371 729 MobiDBLite consensus disorder prediction 1 25 - -
Vivi5g03371 729 FunFam Acyl-coenzyme A oxidase 236 372 - -
Vivi5g03371 729 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03371 Vivi-Chr5 124954492 124959930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03371 52 727 Acyl Lipid Metabolism Gene Families AT1G06290 72.230 0.0 1072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03371 K00232 - gmx:100790627 1179.85