Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2078 ATGGACCACCACCACCGCGTCTCCCGGCGAGCCGAGGTCCTCGCCAACCACCTCCTCCGCCGCGCGCCGCCTCCGTCCTCCCCCCTCCGCCCGCGCCGCTGCCTGGGCTACTCCCCCCCGGAGCTCTCGAACCCATTCTCATTCGACGCGCGGGAGATGCGGCGCCTGATGGACGGGCACAACCTGGAGGACCGCGATTGGCTGTTCTCGGTGATCGTGCAGAGCGGCCTCTTCAACCGGCGCGAGCGCGCCGGGAGGGTGTTCGTGTGCCCCGACTACAACCAGTCCATGGAGCAGCAGCGCGAGGCCACCATGCGGCGCATCGGGTACCTGCTCGAGAGAGGGGCCTTCCGCGGGTGGCTCACCGGGGAGGGTCCGCAGCAGGAGCTGAGGAAGCTCGCGCTGCATGAGGTCATTGGGATGTACGATCACTCGCTCGCGGTCAAGCTTGGCGTTCACTTCTTCTTGTGGGGTGGGGCCGTGAAGTTTCTGGGAACTAAGCGCCATCATGACAAGTGGTTGAGTGCTACTGAAAACTATGAGATGAAGGGTTGTTTTGCTATGTCTGAGTTGGGCCATGGAAGTAATGTTCGAGGAATTGAAACGGTCACTACTTATGATTCAAACACTGGAGAATTTGTCATCAATACTCCTTGTGAATCGGGTCAGAAGTATTGGATTGGTGGTGCAGCAAATCATGCAACGCACACTATAGTCTTTTCACAGCTCAATATAAATGGAAGCAATCAAGGGGTGCATGCATTTATTGCCCAAATCAGGGATTCAGATGGAAACATATGTCCAAACATCCGAATAGCTGATTGTGGTCACAAAACTGGTTTAAATGGAGTTGATAATGGCCGTATCTGGTTTGATAATGTGAGGATACCCAGAGAGAATTTGTTGAATTCTGTGGCTGATGTTTCACCAAGTGGTGAATATTTGAGTGCAATAAAAAATGCAGATCAGAGGTTTGCCGCATTCTTAGCTCCATTGACCTCTGGTCGTGTTACTATTGCTGTCAGTGCTGTTTACATCTCCAAGATTAGCTTGGCCATTGCTATAAGATATGCATTGACAAGGCGGGCCTTCTCCATTACGCCAAATGGGCCTGAAGTTTTACTGCTTGATTACCCTAGTCATCAACGGCGTCTGTTACCTTTACTTGCTAAGGTATATGCAATGAGTTTTGCCGCAAATGAGCTGAAAATGATGTATGTCAAAAGAACGCCCGAGTCAAACAaaacaattcatattatttCTAGTGCTTACAAGGCTACGTTTACTTGGAATAATATGCGTACTCTCCAGGAATGTCGTGAAGCCTGTGGAGGACAAGGAATTAAAGCTGAAAATCGTGTTGGTAATTTCATGGGTGAATTTGACGTTCATTCAACATTTGAGGGGGACAACAATGTTCTGATGCAGCAGATTAGCAAGGCACTCTTTGCAGAATACGTAGCATGTCAGATGAAAAACAAGCCATTCAGAGGTTTGGGATTAGAACACATGAACAAACCTTTGCCTGTTATCCCATCTCAGTTAACAAGTTCCACCATTAGGAGCAGTGAATTTCAGACTGATCTATTCCACCTGAGAGAGCGAGACCTATTGAGACGTTTTGCTGAAGAGGTTTCAGGATATCAATCTCATGGAGAAAGCAAAGAGTCTGCCTTCATTCTAGGTTATCAGCTTGCAGAAGACTTGGGCAGAGCTTTCTCAGAACgagcaatattaaaaacattcatGGGGGCCGAGTCAACTTTACCAGCTGGTTCATTGAAGAATGTCTTAGGTCTATTGAGATCGTTGTATGCTGTTATTTGTGTGGATGAAGATGCTGCCTTTCTTCGATATGGATACTTGTCAACAGAGAATGCTTACGCAGTGAGGAAAGAAGTGCCAAAACTGTGTGCTGAACTTAGACCACATGCACTTGCCTTGGTCAGTTCCTTGGTATTCCTGATGCTTTTTTGA 1977 0.479 MDHHHRVSRRAEVLANHLLRRAPPPSSPLRPRRCLGYSPPELSNPFSFDAREMRRLMDGHNLEDRDWLFSVIVQSGLFNRRERAGRVFVCPDYNQSMEQQREATMRRIGYLLERGAFRGWLTGEGPQQELRKLALHEVIGMYDHSLAVKLGVHFFLWGGAVKFLGTKRHHDKWLSATENYEMKGCFAMSELGHGSNVRGIETVTTYDSNTGEFVINTPCESGQKYWIGGAANHATHTIVFSQLNINGSNQGVHAFIAQIRDSDGNICPNIRIADCGHKTGLNGVDNGRIWFDNVRIPRENLLNSVADVSPSGEYLSAIKNADQRFAAFLAPLTSGRVTIAVSAVYISKISLAIAIRYALTRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKVYAMSFAANELKMMYVKRTPESNKTIHIISSAYKATFTWNNMRTLQECREACGGQGIKAENRVGNFMGEFDVHSTFEGDNNVLMQQISKALFAEYVACQMKNKPFRGLGLEHMNKPLPVIPSQLTSSTIRSSEFQTDLFHLRERDLLRRFAEEVSGYQSHGESKESAFILGYQLAEDLGRAFSERAILKTFMGAESTLPAGSLKNVLGLLRSLYAVICVDEDAAFLRYGYLSTENAYAVRKEVPKLCAELRPHALALVSSLVFLMLF 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2078 658 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 324 490 IPR036250 GO:0016627
Ssu3g2078 658 Pfam Acyl-CoA dehydrogenase, C-terminal domain 327 482 IPR009075 GO:0016627
Ssu3g2078 658 PANTHER ELECTRON TRANSPORT OXIDOREDUCTASE 9 652 IPR012258 GO:0003997|GO:0005777|GO:0006631|GO:0071949
Ssu3g2078 658 PIRSF Acyl-CoA_oxidase 39 654 IPR012258 GO:0003997|GO:0005777|GO:0006631|GO:0071949
Ssu3g2078 658 Pfam Acyl-CoA oxidase 525 652 IPR002655 GO:0003997|GO:0005777|GO:0006635
Ssu3g2078 658 Gene3D - 524 652 - -
Ssu3g2078 658 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 92 308 IPR009100 GO:0016627
Ssu3g2078 658 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 521 651 IPR036250 GO:0016627
Ssu3g2078 658 PANTHER ACYL-COENZYME A OXIDASE 3.2, PEROXISOMAL-RELATED 9 652 - -
Ssu3g2078 658 Pfam Acyl-CoA dehydrogenase, middle domain 185 294 IPR006091 GO:0016627
Ssu3g2078 658 MobiDBLite consensus disorder prediction 14 33 - -
Ssu3g2078 658 Gene3D - 331 491 - -
Ssu3g2078 658 Gene3D - 184 323 IPR046373 GO:0016627
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2078 Ssu-Chr3 68482917 68489762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2078 5 652 Acyl Lipid Metabolism Gene Families AT1G06290 72.265 0.0 1025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2078 K00232 - gmx:100790627 1178.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2078 3 68482917 68489762 Ssu3g2078 3 68482917 68489762 ECH