Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2502 ATGGACAACCACCGCATCACTCGGCGAACCACCATTCTCACGAACCACCTCCGTCACGACCCCCCAACCGCACCAACAATCCTCCACAACCATGCTTGCCTTAGCCACTCTCCTCCCGAACTCTCCGAATCAAATCCAACAACATTCGACACCTTCGAGATGCGGAAGCTCTTAGACGGTCACAATTTGGAAGATCGCGACTGGCTATTCGGGTTGATGATACAGAGCGGACTATTCAACCGGCGGGAAGTCGACGGGAGGGTGTTTGTGAATCCTGATTATAACCAGTCCATGGAGCAACAGAGGGAAATGACCATGAAACGAATTGCGTATTTGTTGGATCGTGGTGTTTTTCGTGGGTGGCTTACTGGTGATGGCCCACAAGAGGAGTTGAGGAAGTTGGCTCTTCACGAGGTTATTGGAATGTACGATCATTCTCTTGCTGTTAAGCTTGGTGTTCATATCTTCTTGTGGGGTGGGGCTGTAAAGTTTCTGGGAACCAAGCGTCACCATGACAAGTGGTTGAGAGCTACTGAAAACTATGACATCAAGGGCTGTTTTGCTATGTCTGAGTTGGGCCATGGGAGTAATGTCCGAGGAATCGAAACCGTCACTACTTATGATCCAATTTCTGGTGAATTTGTCATTAATACTCCCTGTGAGTCAGCTCAGAAGTATTGGATCGGTGGTGCAGCAAATCATGCAACACATACTATAGTCTTTTCACAGCTCAACATAAATGGGAGCAATCAGGGGGTGCATGCTTTTATTGCCCAAATCAGGGATTCAGACGGAAACATATGCCCAAATATCCGAATAGCTGAATGTGGTCACAAAATTGGTTTAAATGGAGTTGATAATGGCCGTATCTGGTTTGACAATGTGAGAATACCAAGAGAGAATTTGTTAAATTCCATGGCTGACGTTTCACCAAGTGGCGAATATTTGAGTGCAATAAAAAATACAGATCAGAGGTTTGCAGCATTCTTAGCCCCTCTGACCTCTGGTCGTGTAACTATTGCCGTCAGTTCTGTTTACATCTCCAAGATAAGCTTAGCCATTGCTATAAGATATGCATTGACAAGGCGAGCCTTTTCTATTACACCAAATGGGCCTGAGGTTTTACTGCTTGATTACCCAAGTCATCAACAACGTCTATTACCTTTACTTGCGAAGATATATGCAATGAGTTTTTCTGCAATTGAGCTCAAAAAGTTGTATGTGAATAGAACGCCTGAGTCAAACAAAGCAATTCATATTGTTTCTAGTGCATACAAGGCTACTTTTACATGGAATAATATGCGTACTCTTCAGGAATGTCGTGAAGCATGTGGGGGACAGGGCGTCAAAACTGAAAACCGTATTGGTCAATTCAAGGGTGAATATGATGTGCATTCAACATTTGAGGGTGACAACAATGTGCTGATGCAGCAGATAAGCAAGGCGCTCCTTGCAGAATACATAGCATGTCAGACAAAAAACAAACCATTTAAAGGTCTTGGATTAGAACATATGAACGGATCTTGTCCTGTCATCCCATCTCAGCTAACAAGTTCTACCATCAAGAGCAGTGAATTTCAGATTGATCTGTTCCACCTAAGAGAGCGAGACCTATTGAAACGTTTTGCTGCAGAGGTTTCAGAACATCAATCTCAAGGAAATAGCAAGGAGTCTGCCTTCATTCTAAGTTATCAGCTTGCTGAGGACTTGGGCAGAGCTTTCTCTGAACGAGCAATACTGAAAACGTTTATGGAGGCCGAGTCAGCTTTACCAGCCGGTTCATTGAAGGATGTCTTAGGTCTGTTAAGATCGTTATATGCCTTGATTAGTGTGGACGAAGACGCTGCCTTTCTCCGATATGGATACTTGTCAACAGAAAATGCCTCTGCAGTGAGGAAAGAAGTTCCAAAGCTATGTGCTGAACTTCGACCGCATGCACTTGCCTTGGTTAACTCCTTTGGTATTCCTGATGCGTTTTTGAGCCCTATTGCATACAACTGGGTTGAGTCAAATTCTTGGTCTACTGCTCAACATTAA 2037 0.4408 MDNHRITRRTTILTNHLRHDPPTAPTILHNHACLSHSPPELSESNPTTFDTFEMRKLLDGHNLEDRDWLFGLMIQSGLFNRREVDGRVFVNPDYNQSMEQQREMTMKRIAYLLDRGVFRGWLTGDGPQEELRKLALHEVIGMYDHSLAVKLGVHIFLWGGAVKFLGTKRHHDKWLRATENYDIKGCFAMSELGHGSNVRGIETVTTYDPISGEFVINTPCESAQKYWIGGAANHATHTIVFSQLNINGSNQGVHAFIAQIRDSDGNICPNIRIAECGHKIGLNGVDNGRIWFDNVRIPRENLLNSMADVSPSGEYLSAIKNTDQRFAAFLAPLTSGRVTIAVSSVYISKISLAIAIRYALTRRAFSITPNGPEVLLLDYPSHQQRLLPLLAKIYAMSFSAIELKKLYVNRTPESNKAIHIVSSAYKATFTWNNMRTLQECREACGGQGVKTENRIGQFKGEYDVHSTFEGDNNVLMQQISKALLAEYIACQTKNKPFKGLGLEHMNGSCPVIPSQLTSSTIKSSEFQIDLFHLRERDLLKRFAAEVSEHQSQGNSKESAFILSYQLAEDLGRAFSERAILKTFMEAESALPAGSLKDVLGLLRSLYALISVDEDAAFLRYGYLSTENASAVRKEVPKLCAELRPHALALVNSFGIPDAFLSPIAYNWVESNSWSTAQH* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2502 678 Pfam Acyl-CoA dehydrogenase, middle domain 186 295 IPR006091 GO:0016627
Mtr4g2502 678 PANTHER ACYL-COENZYME A OXIDASE 3.2, PEROXISOMAL-RELATED 8 674 - -
Mtr4g2502 678 PANTHER ELECTRON TRANSPORT OXIDOREDUCTASE 8 674 IPR012258 GO:0003997|GO:0005777|GO:0006631|GO:0071949
Mtr4g2502 678 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 93 309 IPR009100 GO:0016627
Mtr4g2502 678 Pfam Acyl-CoA oxidase 525 660 IPR002655 GO:0003997|GO:0005777|GO:0006635
Mtr4g2502 678 Gene3D - 185 333 IPR046373 GO:0016627
Mtr4g2502 678 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 325 497 IPR036250 GO:0016627
Mtr4g2502 678 Gene3D - 334 493 - -
Mtr4g2502 678 PIRSF Acyl-CoA_oxidase 31 677 IPR012258 GO:0003997|GO:0005777|GO:0006631|GO:0071949
Mtr4g2502 678 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 523 664 IPR036250 GO:0016627
Mtr4g2502 678 Gene3D - 525 654 - -
Mtr4g2502 678 Pfam Acyl-CoA dehydrogenase, C-terminal domain 328 484 IPR009075 GO:0016627
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2502 Mtr-Chr4 38572137 38578765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2502 1 676 Acyl Lipid Metabolism Gene Families AT1G06290 71.640 0.0 1058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2502 K00232 - gmx:100790627 1174.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2502 4 38572137 38578765 Mtr4g2502 4 38572137 38578765 ECH