Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2077 ATGGGTGCGTACAGAGCGGACGATGATTACGACTACTTGTTCAAGGTGGTGTTGATCGGAGACTCCGGCGTTGGAAAGTCGAATCTGTTGTCTCGATTCACGAAAAACGAATTCAGCTTGGAATCTAAATCCACCATTGGCGTTGAATTCGCCACGCGCAGCATCCACGTCGATGATAAGATCGTAAAGGCGCAAATTTGGGACACCGCAGGCCAAGAAAgATATCGTGCGATCACAAGTGCATATTATCGAGGGGCTGTTGGTGCATTGCTCGTGTATGATGTTACCAGACATGTGACTTTTGAAAACGTGGAGAGATGGTTAAAGGAGCTTCGCGATCACACAGACGCCAACATTGTAATCATGCTTGTGGGGAACAAGGCGGATCTTCGCCACTTGCGCGCCATGTCCACCGACGATGCCAAGGCATTCGCCgagagagaaaacacatttttcatggAAACATCTGCTCTCGAGTCCTTGAATGTCGACAACGCCTTCACAGAGGTGCTCACTCAGATATACCGCGTCGTTAGTAGGAAGACTCTCGAGATTGGGGATGACCCTGCTGCCTTGCCCAAGGGGCAGACCATCAATGTTGGCGGTAGGGATGATGTCTCAGCTGTTAAAAAGGCCGGATGCTGCTCTGCATAG 654 0.4862 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIHVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGNKADLRHLRAMSTDDAKAFAERENTFFMETSALESLNVDNAFTEVLTQIYRVVSRKTLEIGDDPAALPKGQTINVGGRDDVSAVKKAGCCSA 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2077 217 ProSiteProfiles small GTPase Rho family profile. 7 178 - -
Ssu3g2077 217 ProSiteProfiles small GTPase Ras family profile. 8 217 IPR001806 GO:0003924|GO:0005525
Ssu3g2077 217 PANTHER DRAB11-RELATED 1 215 - -
Ssu3g2077 217 SMART rab_sub_5 14 177 - -
Ssu3g2077 217 SMART rho_sub_3 16 173 IPR001806 GO:0003924|GO:0005525
Ssu3g2077 217 PRINTS Transforming protein P21 ras signature 117 130 - -
Ssu3g2077 217 PRINTS Transforming protein P21 ras signature 14 35 - -
Ssu3g2077 217 PRINTS Transforming protein P21 ras signature 55 77 - -
Ssu3g2077 217 PRINTS Transforming protein P21 ras signature 37 53 - -
Ssu3g2077 217 PRINTS Transforming protein P21 ras signature 152 174 - -
Ssu3g2077 217 SMART ras_sub_4 11 177 - -
Ssu3g2077 217 PANTHER RAS-RELATED PROTEIN RABA1F-LIKE 1 215 - -
Ssu3g2077 217 ProSiteProfiles small GTPase Rab1 family profile. 9 215 - -
Ssu3g2077 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 182 IPR027417 -
Ssu3g2077 217 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Ssu3g2077 217 Gene3D - 6 215 IPR027417 -
Ssu3g2077 217 TIGRFAM small_GTP: small GTP-binding protein domain 12 170 IPR005225 GO:0005525
Ssu3g2077 217 CDD Rab11_like 11 175 - -
Ssu3g2077 217 SMART ran_sub_2 19 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2077 Ssu-Chr3 68462117 68465445 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2077 K07904 - gmx:100781889 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2077 3 68462117 68465445 Ssu3g2077 3 68462117 68465445 ECH
Ssu3g2077 3 68462117 68465445 Ssu1g0509 1 11406035 11408633 ECH