Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0444 ATGGGTGCCTATAGAGCGGACGATGATTACGATTACTTGTTCAAGGTGGTTCTGATTGGAGACTCCGGTGTCGGAAAGACGAATCTGTTGTCTCGTTTCACCAAAAATGAATTCAGTTTGGAAACCAAATCAACCATTGGGGTTGAATTCGCCACCCGAAGCATACACGTTGATGATAAGATTGTCAAGGCCCAAATTTGGGACACTGCTGGCCAAGAAAGATATCGTGCAATCACAAGTGCATATTATAGAGGAGCTGTTGGTGCATTACTTGTCTATGATGTGACCAGACACATAACTTTTGAGAATGTGGAGAGATGGTTAAAGGAGCTAAGGGATCACACAGATGCCCACATTGTAATTATGCTTGTCGGAAACAAGGCCGATCTTCGCCATTTGCGCGCTGTATCCGTTGATGATGCAAAGGCATTCGCTGAAAAGGAAAAAACATTTTTTATGGAAACATCTGCCCTTGAGTCCTTGAATGTTGACAATTCTTTCACAGAAGTTCTTACTCAGATATACCATGTTGTTAGTAGGAAAACTCTCGAGATCGGAGATGACCCTGCAGCCTTGCCGAAGGGACAGACGATCAATGTTGGCGGTCGGGACGATGTCTCAGCTGTTAAAAAGGTCGGATGCTGCTCAGCTTAG 654 0.445 MGAYRADDDYDYLFKVVLIGDSGVGKTNLLSRFTKNEFSLETKSTIGVEFATRSIHVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHITFENVERWLKELRDHTDAHIVIMLVGNKADLRHLRAVSVDDAKAFAEKEKTFFMETSALESLNVDNSFTEVLTQIYHVVSRKTLEIGDDPAALPKGQTINVGGRDDVSAVKKVGCCSA 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0444 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 182 IPR027417 -
Lal9g0444 217 PRINTS Transforming protein P21 ras signature 14 35 - -
Lal9g0444 217 PRINTS Transforming protein P21 ras signature 37 53 - -
Lal9g0444 217 PRINTS Transforming protein P21 ras signature 55 77 - -
Lal9g0444 217 PRINTS Transforming protein P21 ras signature 117 130 - -
Lal9g0444 217 PRINTS Transforming protein P21 ras signature 152 174 - -
Lal9g0444 217 SMART ras_sub_4 11 177 - -
Lal9g0444 217 PANTHER RAS-RELATED PROTEIN RABA1F-LIKE 1 215 - -
Lal9g0444 217 SMART arf_sub_2 1 179 - -
Lal9g0444 217 ProSiteProfiles small GTPase Ras family profile. 8 217 IPR001806 GO:0003924|GO:0005525
Lal9g0444 217 TIGRFAM small_GTP: small GTP-binding protein domain 12 170 IPR005225 GO:0005525
Lal9g0444 217 PANTHER DRAB11-RELATED 1 215 - -
Lal9g0444 217 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Lal9g0444 217 SMART ran_sub_2 19 208 - -
Lal9g0444 217 Gene3D - 6 215 IPR027417 -
Lal9g0444 217 ProSiteProfiles small GTPase Rho family profile. 7 178 - -
Lal9g0444 217 ProSiteProfiles small GTPase Rab1 family profile. 9 215 - -
Lal9g0444 217 SMART rab_sub_5 14 177 - -
Lal9g0444 217 SMART rho_sub_3 16 173 IPR001806 GO:0003924|GO:0005525
Lal9g0444 217 CDD Rab11_like 11 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0444 Lal-Chr9 2919520 2921977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0444 15 176 EF-hand Containing Proteins AT5G27540 27.586 7.32e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0444 K07904 - gmx:100781889 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0444 9 2919520 2921977 Lal9g0444 9 2919520 2921977 ECH
Lal9g0444 9 2919520 2921977 Lal23g0924 23 11417047 11419902 ECH
Lal9g0444 9 2919520 2921977 Lal16g0689 16 4435913 4438979 ECH
Lal2g0496 2 2989581 2991586 Lal9g0444 9 2919520 2921977 LSH