Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1178 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lan8g1490 . . Lasa7g01139 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1179 . . . . . . . . . . . . Arst3g01814 . . . Car06g03150 . . . . . . . . . . . . . . . . Lasa7g01140 . . . . . . . . . . . Phco9g01300 . . . . . . . Ssu3g2144 . . . . . . . . . .
Pvu11g1180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1181 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1182 . . . . . . . . . . . . Arst3g01880 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste1g03438 . . . . . . . . . . . . . . .
Pvu11g1183 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal2g0476 . Lan7g0492 . . . . . . . . . . . . . . . . . . . . . . . Ssu3g2117 . . . . . . . . Vivi5g03305 .
Pvu11g1184 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal9g0434 . . . . . . . . . . . . . . . . . . . Pste1g03457 . . . . Ssu3g2116 . . . . . . . . Vivi5g03307 .
Pvu11g1185 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal2g0477 . Lan7g0493 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vivi5g03316 .
Pvu11g1186 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1187 . . . . . . . . . . . . Arst3g01886 . . . . . . . . . . . . . . Lal2g0478 . Lan7g0494 . . . . . . . . . . . . . . . . . . . . . . . Ssu3g2115 . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu11g1178 Chr11 15717636 15717977 -
Lan Lan8g1490 Chr8 21976456 21978750 -
Lasa Lasa7g01139 Chr7 202174953 202178397 -
Pvu Pvu11g1179 Chr11 15719834 15721304 -
Arst Arst3g01814 Chr3 21226043 21228635 -
Car Car06g03150 Chr06 57568647 57574491 +
Lasa Lasa7g01140 Chr7 202174953 202178397 -
Phco Phco9g01300 Chr9 13820305 13824154 -
Ssu Ssu3g2144 Chr3 70073781 70077695 -
Pvu Pvu11g1180 Chr11 16267986 16268417 +
Pvu Pvu11g1181 Chr11 16304952 16306463 +
Pvu Pvu11g1182 Chr11 16386252 16390064 -
Arst Arst3g01880 Chr3 22090636 22094505 -
Pste Pste1g03438 Chr1 16019799 16023360 +
Pvu Pvu11g1183 Chr11 16401280 16403390 -
Lal Lal2g0476 Chr2 2878737 2882820 -
Lan Lan7g0492 Chr7 3609473 3613444 -
Ssu Ssu3g2117 Chr3 69492717 69498314 +
Vivi Vivi5g03305 Chr5 123813418 123818396 -
Pvu Pvu11g1184 Chr11 16720089 16721403 +
Lal Lal9g0434 Chr9 2848628 2856091 +
Pste Pste1g03457 Chr1 16109678 16121495 +
Ssu Ssu3g2116 Chr3 69416870 69429424 -
Vivi Vivi5g03307 Chr5 123830783 123835897 +
Pvu Pvu11g1185 Chr11 16722938 16731048 +
Lal Lal2g0477 Chr2 2883958 2890829 +
Lan Lan7g0493 Chr7 3615364 3622840 +
Vivi Vivi5g03316 Chr5 123965867 123975347 -
Pvu Pvu11g1186 Chr11 16737821 16739871 +
Pvu Pvu11g1187 Chr11 16873412 16874991 -
Arst Arst3g01886 Chr3 22179205 22180706 +
Lal Lal2g0478 Chr2 2891344 2892597 -
Lan Lan7g0494 Chr7 3623199 3624802 -
Ssu Ssu3g2115 Chr3 69411559 69412815 +