LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu11g1194	ATGGATCACCGCGTCTCCCGCCGAACCGAGATCCTCACCAACCACCTCCTCCGTCGCGCACCGCCTCCTTCCTCCGTTCTGCACCCCCATCGCTGTCTGAGCTACTCCCCTCCCGAGCTCTCCAACGATTTCGCGTTCGACGCGCGGGAGATGCGGAGGCTGATGGACGGGCACAATCTGGAGGACCGCGATTGGCTCTTCTCCGTCATCGTGCAGAGCGCACTCTTCAACCGCCGCGAGCGCGCCGGCAGAATCTTCGTCTGCCCAGACTACAACCAGTCCATGGAGCAGCAGCGCGAAGCCACCTTGAAGCGCATCGAGTATCTTGTGAAGAGAGGGGTTTTCCGAGGGTGGCTCACCGGCGAGGCCCCGGAGGAAGAGTTGAGGAAACTCGCGCTCCATGAGGTTCTAGGGATGTACGATCACTCCCTTGCTGTTAAGCTTGGTGTTCACTACTTCCTCTGGGGTGGGGCCGTGAAGTTTTTGGGAACCAAGCGCCATCATGACAAGTGGTTAAGTGCCACTGAAAACTATGACATGAAGGGTTGTTTTGCTATGTCTGAGTTGGGCCATGGAAGTAATGTGCGAGGAATTGAAACAATCACCACTTATGATTCAAACACTGGAGAATTTGTCATCAATACTCCATGTGAATCGGGTCAGAAGTATTGGATTGGTGGTGCAGCAAATCATGCAACACATACTATAGTCTTTTCACAGCTCAATATAAATGGAAGCAATCAAGGGGTGCATGCATTCATTGCCCAAATCAGGGATTCAGATGGAAACATATGTCCAAACATCCGAATAGCTGATTGTGGTCACAAAACTGGTTTAAATGGAGTTGATAATGGCCGTATCTGGTTTGATAATGTGAGGATACCTCGGGAGAATTTGTTGAATTCTGTGGCTGATGTTTCCCCAACTGGTGAATATTTGAGTGCAATAAAAAATATTGATCAGAGGTTTGCTGCTTTCTTAGCCCCTTTGACCACTGGTCGCGTTACTATTGCTGTTAGTGCTGTTTACATGTCCAAGATTAGCTTGGCCATTGCTATAAGATATGCTCTGACAAGGCGGGCATTCTCCATTACACCAAATGGACCTGAAGTTTTACTGCTTGATTACCCTAGTCATCAACAACGTCTGTTACCTCTACTTGCAAAGGTATATGCAATGAGTTTTTCCGCAAATGATCTCAAAATGATGTATGTTAAAAGAACACCTGAGTCAAACAAAGCAATTCATATTATTTCTAGTGCATACAAGGCTACTTTTACTTGGAATAATATGCGTACTCTCCAAGAATGTCGTGAAGCCTGTGGAGGCCAAGGAGTTAAATCTGAAAATCGTGTTGGTCATTTCATGGGTGAATTCGATGTGCAATCGACATTTGAGGGGGACAACAATGTTCTGATGCAGCAGATTAGCAAGGCACTCTTTGCAGAAAACGTAGCATGTCAGAAGCAAAACAAACCTTTCAGTGGTTTGGGATTAGAGCACATGAACAAACCTTTACCTATTATCCCATCTCACGTAACAAGTCCAATCATTAGGAGCAGTGAATTTCAGATTGATCTGTTCCACCTAAGAGAGCGGGACCTATTGAGGCGCTTTGCTGAAGAGGTCTCAGAATATCAATCTCGTGGAGAAAGCAAAGAGTCTGCCTTCATTCTAAGTTATCAGCTAGCAGAGGACTTGGGCAGAGCTTTCTCAGAACGAGCAATACTGAAAACGTTCATGGATGCCGTGTCAACTTTACCAGCTGGTTCATTGAAGAATGTGTTGGGTCTACTGAGATCGTTGTATGCTGTGATAAGTGTGGATGAAGATGCTACCTTTCTTCGATATGGATACTTGTCAACAGAAGATGCTTCTGCAGTGAGGAAAGAGGTGCCAAAACTCTGCGCTGAACTTCGACCACATGCACTTGCCTTGGTCAGTTCCTTTGGTATTCCTGATGCTTTTTTGAGCCCTATTGCATATAACTGGGTTGATTCAAATTCTTGGTCTTCTCAACTTTAG	2025	0.4627	MDHRVSRRTEILTNHLLRRAPPPSSVLHPHRCLSYSPPELSNDFAFDAREMRRLMDGHNLEDRDWLFSVIVQSALFNRRERAGRIFVCPDYNQSMEQQREATLKRIEYLVKRGVFRGWLTGEAPEEELRKLALHEVLGMYDHSLAVKLGVHYFLWGGAVKFLGTKRHHDKWLSATENYDMKGCFAMSELGHGSNVRGIETITTYDSNTGEFVINTPCESGQKYWIGGAANHATHTIVFSQLNINGSNQGVHAFIAQIRDSDGNICPNIRIADCGHKTGLNGVDNGRIWFDNVRIPRENLLNSVADVSPTGEYLSAIKNIDQRFAAFLAPLTTGRVTIAVSAVYMSKISLAIAIRYALTRRAFSITPNGPEVLLLDYPSHQQRLLPLLAKVYAMSFSANDLKMMYVKRTPESNKAIHIISSAYKATFTWNNMRTLQECREACGGQGVKSENRVGHFMGEFDVQSTFEGDNNVLMQQISKALFAENVACQKQNKPFSGLGLEHMNKPLPIIPSHVTSPIIRSSEFQIDLFHLRERDLLRRFAEEVSEYQSRGESKESAFILSYQLAEDLGRAFSERAILKTFMDAVSTLPAGSLKNVLGLLRSLYAVISVDEDATFLRYGYLSTEDASAVRKEVPKLCAELRPHALALVSSFGIPDAFLSPIAYNWVDSNSWSSQL*	675

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu11g1194	674	Gene3D	-	182	318	IPR046373	GO:0016627
	Pvu11g1194	674	PIRSF	Acyl-CoA_oxidase	36	674	IPR012258	GO:0003997\|GO:0005777\|GO:0006631\|GO:0071949
	Pvu11g1194	674	SUPERFAMILY	Acyl-CoA dehydrogenase C-terminal domain-like	322	494	IPR036250	GO:0016627
	Pvu11g1194	674	Pfam	Acyl-CoA dehydrogenase, middle domain	183	292	IPR006091	GO:0016627
	Pvu11g1194	674	PANTHER	ELECTRON TRANSPORT OXIDOREDUCTASE	7	671	IPR012258	GO:0003997\|GO:0005777\|GO:0006631\|GO:0071949
	Pvu11g1194	674	SUPERFAMILY	Acyl-CoA dehydrogenase C-terminal domain-like	518	661	IPR036250	GO:0016627
	Pvu11g1194	674	Gene3D	-	522	651	-	-
	Pvu11g1194	674	SUPERFAMILY	Acyl-CoA dehydrogenase NM domain-like	90	309	IPR009100	GO:0016627
	Pvu11g1194	674	PANTHER	ACYL-COENZYME A OXIDASE 3.2, PEROXISOMAL-RELATED	7	671	-	-
	Pvu11g1194	674	Pfam	Acyl-CoA dehydrogenase, C-terminal domain	325	480	IPR009075	GO:0016627
	Pvu11g1194	674	Pfam	Acyl-CoA oxidase	522	657	IPR002655	GO:0003997\|GO:0005777\|GO:0006635
	Pvu11g1194	674	Gene3D	-	329	489	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu11g1194	Pvu-Chr11	17825156	17832408	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu11g1194	2	672	Acyl Lipid Metabolism Gene Families	AT1G06290	70.982	0.0	1054

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu11g1194	K00232		-	gmx:100790627	1229.93