Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2086 ATGGACAACGACAACCGCCGCGCTTCCCGCCGCACGGAAGTCCTCTCGAAGCACCTCCTCCCGCACCCTCTCACAACGACCGCCCTCCTCTCGACCTCCAACTGCCTCAGTTACTCTCCACCAGAGCTCTCCTCCTCCAACCCGGTCTCCTTCGACACTTCCCGGATGCGCGCTCTCCTCGACGGCCACAACCTCGACGACCGTGACTGGCTCTTCGGCCTCATCGTTCAGAGCCCTCTCTTCAATCGCCAAGAGCGCGGCGGCCGCGTCTTCGTCTCCGTCGACTATAACCACTCCATGGAGCAGCAGCGCGAGGAGACCATGCGCCGGATCGGTTACCTTCTCGATCGCGGCGTCTTTAGAGGTTGGCTCACCGGCGATGGCCCTCAAGAAGAGCTCAGGAAGCTGGCCCTTCATGAGGTCGTCTCCATGTACGATCACTCCCTCGCCGTCAAGATCGGTGTCCATATCTTCTTGTGGGGTGGGGCTGTAAAATTTCTTGGAACAAAGCGGCATCATGACAAGTGGTTGAGAGCTACTGAAAACTATGAGCTGAAGGGTTGTTTCGCTATGACTGAGTTGGGACATGGAAGTAATGTACGGGGAGTCGAAACAGTAACTACTTATGATTCGAGAACTGGAGAATTTGTCATCAATACTCCATGTGAATCGGCGCAGAAGTACTGGATTGGTGGTGCAGCAAATCATGCAACACACACTATAGTCTTTTCACAGCTCTACATAAATGGAGGCAATCAAGGCGTGCATGCATTTATTTGCCCAATTAGGGATTCAAGTGGAAATGTATGCCCAAACGTCCGCATAGCTGAGTGTGGTCACAAAATTGGTTTAAATGGAGTTGATAATGGCCGTATCTGGTTTGACAATGTAAGAATACCAAGAGAGAATTTGCTGAATTCCGTGGCTGATGTTTCACCAAGAGGTGAATATTTGAGTACCATAAAAAATGTAGATCAGAGATTTGCAGCATTTTTAGCCCCTTTGACCTCTGGTCGTGTAACTATTGCCTCTAGTGCTGTTTACATCTCCAAGATTGGCTTATCCATTGCTATAAGATATGCATTGACAAGACGAGCCTTTTCTATGACACCAAACGGACCTGAAATTCTGTTGCTTGATTACCCAAGTCATCAGCGGCGTCTACTACCCTTACTTGCAAAGATATATGCAATGAGTTTTGCTGCAATTGAGCTCAAAATGATGTATGTGAATAGAACACCCGAGTCAAACAAAGCAATCCATATTGTTTCAAGTGCTTATAAGGCTACTTTTACGTGGAATAATATGCGCACACTTCAGGAATGTCGTGAAGCCTGTGGAGGACAGGGCGTTAAAAGTGAAAATCGTATCGGTCCGTTCAAGGGCGAATTTGATGTGCATTCAACATTTGAAGGGGACAATAATGTTCTGATGCAGCAGATTAGCAAGGCGCTCCTTGGAGAATTCATTGTGTGTCAGACTAAGAAGAAGCCATTTAGAGGTTTGGGGTTAGAACACATGAACAACCCTGCACCTGTCCTCCCGTCTCAGTTAACGAGTTCTATTCTCATGAGCAGTGAATTTCAGCTTGATCTCTTCCACCTAAGAGAGCGAGATCTATTGAGACGCTTTGCTGCGGAGGTTTCACAATATCAAACTCAGGGGGAAAGCAAAGAGTCTGCCTTTAATCTAAGCTATCAAGTCGCAGAGGACTTAGGCAGAGCTTTCTCCGAACGCGCAATACTGAAAACCTTCATCGAGGTCGAGTCAAAGGTGCCGGCTGGTTCATTGAAGGATGTCTTGGGTCTGTTGAGGTCGTTATATGCCTTGATTTCTGTGGATGAAGATTCTGCTTTTCTTCGCTATGGATACTTGTCAACTGAGAATGCTGCTGCAGTGCGGAAAGAAGTGCCGAAACTGTGTACTGAACTTCGACCGCACGCATTCGCCTTGGTCAGTTCCTTCGGTATTCCCGATGCCTTCTTGAGTCCTATTGCGTTCGACTGGGTTGGTTCGAATGCATGGTCCTCTGCTCAACACTAG 2043 0.4812 MDNDNRRASRRTEVLSKHLLPHPLTTTALLSTSNCLSYSPPELSSSNPVSFDTSRMRALLDGHNLDDRDWLFGLIVQSPLFNRQERGGRVFVSVDYNHSMEQQREETMRRIGYLLDRGVFRGWLTGDGPQEELRKLALHEVVSMYDHSLAVKIGVHIFLWGGAVKFLGTKRHHDKWLRATENYELKGCFAMTELGHGSNVRGVETVTTYDSRTGEFVINTPCESAQKYWIGGAANHATHTIVFSQLYINGGNQGVHAFICPIRDSSGNVCPNVRIAECGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPRGEYLSTIKNVDQRFAAFLAPLTSGRVTIASSAVYISKIGLSIAIRYALTRRAFSMTPNGPEILLLDYPSHQRRLLPLLAKIYAMSFAAIELKMMYVNRTPESNKAIHIVSSAYKATFTWNNMRTLQECREACGGQGVKSENRIGPFKGEFDVHSTFEGDNNVLMQQISKALLGEFIVCQTKKKPFRGLGLEHMNNPAPVLPSQLTSSILMSSEFQLDLFHLRERDLLRRFAAEVSQYQTQGESKESAFNLSYQVAEDLGRAFSERAILKTFIEVESKVPAGSLKDVLGLLRSLYALISVDEDSAFLRYGYLSTENAAAVRKEVPKLCTELRPHAFALVSSFGIPDAFLSPIAFDWVGSNAWSSAQH* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2086 680 Gene3D - 527 656 - -
Amo13g2086 680 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 523 665 IPR036250 GO:0016627
Amo13g2086 680 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 131 308 IPR009100 GO:0016627
Amo13g2086 680 Gene3D - 334 494 - -
Amo13g2086 680 Pfam Acyl-CoA oxidase 527 662 IPR002655 GO:0003997|GO:0005777|GO:0006635
Amo13g2086 680 Pfam Acyl-CoA dehydrogenase, C-terminal domain 330 486 IPR009075 GO:0016627
Amo13g2086 680 Gene3D - 187 324 IPR046373 GO:0016627
Amo13g2086 680 Pfam Acyl-CoA dehydrogenase, middle domain 188 297 IPR006091 GO:0016627
Amo13g2086 680 PANTHER ELECTRON TRANSPORT OXIDOREDUCTASE 7 676 IPR012258 GO:0003997|GO:0005777|GO:0006631|GO:0071949
Amo13g2086 680 PANTHER ACYL-COENZYME A OXIDASE 3.2, PEROXISOMAL-RELATED 7 676 - -
Amo13g2086 680 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 327 494 IPR036250 GO:0016627
Amo13g2086 680 PIRSF Acyl-CoA_oxidase 38 679 IPR012258 GO:0003997|GO:0005777|GO:0006631|GO:0071949
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2086 Amo-Chr13 33225604 33231216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2086 5 677 Acyl Lipid Metabolism Gene Families AT1G06290 71.217 0.0 1036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2086 K00232 - gmx:100790627 1129.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2086 13 33225604 33231216 Amo13g2086 13 33225604 33231216 ECH