Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0117 ATGATGAAAGAGGATGAAGCAAAAGATAACAGCAACTTGCATGGAAGGAAATCAATCCCACCCTACATGAAGGCTATTTCTGGCTCAGTTGGAGGAATTATGGAGGCTTCTTGCCTGCAACCCATTGATGTGATCAAGACCAGATTGCAGCTTGATAGGTCAGGGAATTACAAGGGAATATTGCACTGTGGTGCCACAATTTCACAAACAGAAGGTGTGCGGGCTTTGTGGAAAGGATTGACACCTTTTGCCACGCATTTGACCTTGAAGTATGCACTTCGAATGGGTTCAAATGCTGTGCTTCAATCGGCGTTTAAGGACCCTGAGACTGGCAAGCTCAGTGGTTATGGGCGCTTGCTTTCTGGTTTTGGTGCTGGAGTGCTTGAGGCTATTGTTATCGTCACACCATTTGAGGTTGTGAAGATAAGATTGCAGCAGCAGAAAGGTCTAAGCCCTGAGCTTTTGAAGTATAAAGGTCCTGTTCACTGTGCTGGAATGATTATTAGAGAAGAAGGATTTCGGGGTCTCTGGGCAGGTGTTGCTCCTACTGTGATGCGTAATGGGACAAACCAATCTGCCATGTTTACTGCCAAAAATGCTTTTGATGTGCTTTTGTGGAAGAAGCATGAAGGGGATGGGAAAGTCCTCCAACCATGGCAATCTATGATTTCTGGATTTCTTGCAGGCACAGCAGGTCCTATTTGTACTGGTCCATTTGATGTAGTGAAAACAAGGTTGATGGCTCAAAGCCGAGAAGGGGGTGAACTGAAATACAAGGGTATGACACATGCCATTAGAACAATATATGCAGAAGAAGGACTTCTGGCCTTATGGAAAGGTCTGTTGCCTAGACTCATGAGGATCCCTCCTGGACAGGCCATTATGTGGGCTGTGGCTGATCAACTAATTGGTTTGTATGAGAGGAGATATATTCAAACAGCATTATAA 948 0.4494 MMKEDEAKDNSNLHGRKSIPPYMKAISGSVGGIMEASCLQPIDVIKTRLQLDRSGNYKGILHCGATISQTEGVRALWKGLTPFATHLTLKYALRMGSNAVLQSAFKDPETGKLSGYGRLLSGFGAGVLEAIVIVTPFEVVKIRLQQQKGLSPELLKYKGPVHCAGMIIREEGFRGLWAGVAPTVMRNGTNQSAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPICTGPFDVVKTRLMAQSREGGELKYKGMTHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQLIGLYERRYIQTAL* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0117 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 216 305 IPR018108 -
Pvu11g0117 315 PRINTS Mitochondrial carrier protein signature 37 51 IPR002067 GO:0055085
Pvu11g0117 315 PRINTS Mitochondrial carrier protein signature 129 147 IPR002067 GO:0055085
Pvu11g0117 315 PRINTS Mitochondrial carrier protein signature 225 247 IPR002067 GO:0055085
Pvu11g0117 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
Pvu11g0117 315 PANTHER SUCCINATE/FUMARATE MITOCHONDRIAL TRANSPORTER-RELATED 12 310 - -
Pvu11g0117 315 Pfam Mitochondrial carrier protein 216 307 IPR018108 -
Pvu11g0117 315 Pfam Mitochondrial carrier protein 115 208 IPR018108 -
Pvu11g0117 315 Pfam Mitochondrial carrier protein 18 106 IPR018108 -
Pvu11g0117 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 19 104 IPR018108 -
Pvu11g0117 315 PANTHER SUCCINATE/FUMARATE MITOCHONDRIAL TRANSPORTER 12 310 - -
Pvu11g0117 315 SUPERFAMILY Mitochondrial carrier 18 302 IPR023395 -
Pvu11g0117 315 Gene3D Mitochondrial carrier domain 23 313 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0117 Pvu-Chr11 858793 861093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0117 38 301 Miscellaneous Gene Families AT3G54110 29.856 1.55e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0117 K15100 - gmx:100807301 583.563