Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g1260 ATGGCTTCCCACATTCACATTGATTCATTGTTACAAAAATGTAACACTCTCATTCACATGAAGCAACTTCAAGCTCATCTCATAACCACCGGCAAATTCCAATTCCACCCTTCCCGCTCCAAGCTCCTCGAACTCATCTCCATCTCTCCCTCCGGCAACCTCTCTCTCGCCGGAAATATTTTCCGGCAAATCCAAACCCCCTCCACCAACGACTACAACGCCGTTCTTCGAGGCCTCGCTCAAAGTTCCGAACCAACACAGTCCATTTCATGGTACCGCAACATGTTACGCTGCGTTCAAAGGGTTGATGCTTTGACATGTTCCTTTGCTCTCAAGGGTTGTGCGCGTGCTTTGGCTTTTTCTGAAGCGACCCAGTTGCATTCTCAGCTTCTGCGTTTTGGTTTTGATGCAGATGTGTTGTTAGTTACAACTTTGTTGGATGTTTATGCTAAAACGGGCTATATTGATGACGCACAGAAGATGTTTGATGAAATGCCGAAACGAGATATTGCTTCTTGGAATTCGATGATTTCTGGGTTAGCGCAAGGGAGTCGGCCTAATGAAGCTATAGATTTGTTTAATAGGATGAAGGAAGAGGGATGGAGGCCTAATGCTGTGACTGTTCTCGGTGTGCTTTCGGCTTGTTCTCAATTGGGTGCTTTGAAACAGGGTGAGATTGTTCATGGGTATGTTGTGGATGAGAAGCTGGATAAGAATGTGATTGTTTGTAATGCTGTTATTGATATGTATGCTAAATGTGGGTTTGTTGATAAAGCTTATTCGGTCTTTGAAGGTATGAGTTGTAGGAAAAGTCTTATTACTTGGAATACTATGATCATGGCTTTTGCGATGAATGGCGATGGTTATAAGGCGCTTGATCTTTTGGATCGAATGGGTTTAGATGGAACGTGCCCAGACGCGGTGTCATATCTTGCTGCATTGTGTGCGTGCAACCATGCTGGATTGGTTGATGAAGGGGTGAAATTGTTTGATTTGATGAAAGTGTCTGGGGTGAAACTTAATGTTAAGCATTATGGGACTGTGGTTGATTTGTTGGGTCGGGCGGGAAGGCTCAAAGAGGCGTATGATATTATGAACTCCATGCCTATGTTGCCTGATGTGGTTCTTTGGCAGAGTTTGCTTGGGGCTAGCAAGACTTATGGGAATGTTGAAATGGCAGAGATGGCGTCAACGAAGCTGATGGAGATGGGATCTAAAAATTGTGGGGATTTTGTCTTGCTGTCGAACGTTTATGCAGCACAACAGAGGTGGAAAGATGTAGGGAGGGTAAGGGCGGCTATGGTAAATAATGACGTCAGGAAGGTACAAGGATTTAGTTACACAGAAATAGATGGTAGGATACACAAGTTTATAAATTGTGATAAGAGTCATCTGAATTCAAAAGAGATATATGCAAAGCTGGATGAGATCAAGTTTAGGATTAAAGCCTATGGATATGTAGCTGAAACTAATCTTGTGTTGCATGATATAGGTGATGAGGACAAGGAGAATGCCTTAAATTATCATAGTGAGAAGTTGGCTGTGGCTTATGGTTTAATTAGTACAGTTGTTGGAACACCAATTCAAGTTATAAAAAACCTTAGAATATGCGTGGATTGTCATACTTTCATAAAAATTATATCAAATATTTATAATAGGGAGATTATTGTGAGGGATCGAGCGCGATTTCACAGATTTAAAGACGGTGTTTGCTCTTGCAGAGATTATTGGTAA 1734 0.421 MASHIHIDSLLQKCNTLIHMKQLQAHLITTGKFQFHPSRSKLLELISISPSGNLSLAGNIFRQIQTPSTNDYNAVLRGLAQSSEPTQSISWYRNMLRCVQRVDALTCSFALKGCARALAFSEATQLHSQLLRFGFDADVLLVTTLLDVYAKTGYIDDAQKMFDEMPKRDIASWNSMISGLAQGSRPNEAIDLFNRMKEEGWRPNAVTVLGVLSACSQLGALKQGEIVHGYVVDEKLDKNVIVCNAVIDMYAKCGFVDKAYSVFEGMSCRKSLITWNTMIMAFAMNGDGYKALDLLDRMGLDGTCPDAVSYLAALCACNHAGLVDEGVKLFDLMKVSGVKLNVKHYGTVVDLLGRAGRLKEAYDIMNSMPMLPDVVLWQSLLGASKTYGNVEMAEMASTKLMEMGSKNCGDFVLLSNVYAAQQRWKDVGRVRAAMVNNDVRKVQGFSYTEIDGRIHKFINCDKSHLNSKEIYAKLDEIKFRIKAYGYVAETNLVLHDIGDEDKENALNYHSEKLAVAYGLISTVVGTPIQVIKNLRICVDCHTFIKIISNIYNREIIVRDRARFHRFKDGVCSCRDYW* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g1260 577 Pfam PPR repeat 308 338 IPR002885 -
Mal7g1260 577 Pfam PPR repeat 273 301 IPR002885 -
Mal7g1260 577 Pfam PPR repeat 242 267 IPR002885 -
Mal7g1260 577 Pfam PPR repeat 345 369 IPR002885 -
Mal7g1260 577 Pfam E motif 387 447 IPR046848 -
Mal7g1260 577 Pfam PPR repeat family 169 215 IPR002885 -
Mal7g1260 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Mal7g1260 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 269 IPR002885 -
Mal7g1260 577 Gene3D Tetratricopeptide repeat domain 169 227 IPR011990 GO:0005515
Mal7g1260 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 168 IPR002885 -
Mal7g1260 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Mal7g1260 577 Gene3D Tetratricopeptide repeat domain 228 321 IPR011990 GO:0005515
Mal7g1260 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Mal7g1260 577 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 5 570 - -
Mal7g1260 577 TIGRFAM PPR: pentatricopeptide repeat domain 273 307 IPR002885 -
Mal7g1260 577 TIGRFAM PPR: pentatricopeptide repeat domain 143 170 IPR002885 -
Mal7g1260 577 TIGRFAM PPR: pentatricopeptide repeat domain 308 342 IPR002885 -
Mal7g1260 577 TIGRFAM PPR: pentatricopeptide repeat domain 242 270 IPR002885 -
Mal7g1260 577 TIGRFAM PPR: pentatricopeptide repeat domain 172 205 IPR002885 -
Mal7g1260 577 Gene3D Tetratricopeptide repeat domain 322 513 IPR011990 GO:0005515
Mal7g1260 577 Gene3D Tetratricopeptide repeat domain 4 168 IPR011990 GO:0005515
Mal7g1260 577 PANTHER BNAC07G48870D PROTEIN 5 570 - -
Mal7g1260 577 Pfam DYW family of nucleic acid deaminases 485 577 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g1260 Mal-Chr7 40925310 40927043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g1260 49 577 Glycoside Hydrolase AT3G49170 34.701 5.71e-111 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g1260 - - gmx:100818600 958.747