Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0104 ATGACCGCTCAGTATCAATTGGATTCATTGTTGCAGAAATGCAGCTCTCTGATTAGCATGAAGCAGCTCCAAGCGCATCTCATAACAACCGGAAAATTCCAATTCCACCCTTCCCGGTCAAAGCTCCTCGAGCTCTGCTCCATCTCCCCCGCCGGCGACCTCTCCTTCGCAGGCCAAATTTTCCGGCGAATCCAGACCCCTTCCACCAACGACTGGAACGCCGTTCTTCGAGGCCTGGCCCAAAGCCCAGAACCGATGCAGGCCCTGTCATGGTACCGCGCCATGTCACGCAGTCCCCAAAAGGTGGACGCTTTGACGTGCTCCTTCGCCCTCAAGGGCTGTGCGCGCGCATTGGCTTTCTCCGAAGCCACCCAGATTCATTCTCAGCTTCTGCGTTTTGGATTCGAAGCTGATATATTGTTGCTGACCACGTTGTTGGATGTGTACGCCAAAACCGGTGATCTTCATGCTGCCCATAAGGTGTTTGATAATATGCAAAAGCGAGATATTGCTTCGTGGAATGCAATGATTTCTGGGTTGGCTCAAGGAAGCCGACCCAATGAGGCTATAGGTTTGTTCAACAGAATGAAGGAAGAGGGGTGGCGACCTAATGAGGTAACTGTTCTGGGTGCATTCTCCGCTTGTTCACAATTGGGTGCTTTGAAACATGGCCAGATTATTCATGCCTATGTTGTGGACGAGAAGCTAGACACTAATGTAATTGTTTGTAACGCAGTTATTGATATGTACGCAAAATGCGGCTTTGTTGATAAGGCTTATTCCGTGTTTGTTAGCATGAGCTGCAAGAAGAGTCTTGTCACATGGAACACTATGATCATGGCGCTTGCGATGAACGGTGATGGCAATCAGGCGCTTGAGCTTTTGGATAAGATGGCTGCGGATGGAGTGGATCCGGATGCGGTGTCTTATCTTGCTGCATTGTGTGCATGCAACCATGCTGGCTTGGTGGAAGAAGGGGTTAGGTTGTTTGATATGATGAAGGGGTATGGAGTGAAACTTAATGTTAAGCATTATGGGAGTGTGGTTGATTTGTTAGGTCGAGCAGGAAGGATAAAAGAGGCGTGTGACATCATAAACTCAATGCCTATGATTCCTGATGTGGTGCTCTGGCAGAGTTTGCTTGGGGCTTGTAAGATTCATGGGAACGTGGAAGTGGCTGAGATGGCATCAAGGAAGCTGGTGGAGATGGGATCAAATCATTGTGGGGATTTTGTGTTGTTATCGAATGTTTATGCAGCGCAACAGAGATGGTATGATGTTGGGAGGGTGAGGGAGGCCATGAAGATTAGGGATGTGAGGAAGGTGCCAGGATTTAGTTACACAGAGATTGATGGTAGTATCCACAAGTTTGTGAATGGTGATCAGAGTCATCCGAGTTCCAAAGAGATATATGCAAAACTTGACGAGATCAAGTTCAGGATTAAAGCATATAGATATGAAGCAGAGACTAATCTTGTGCTGCATGATATTGGGGAGGAAGACAAGGAGAATGCGCTTAATTATCACAGCGAGAAGTTGGCCGTGGCATATGGTTTAATTAGTACAGGTGATGGAACACCAATTCAGGTCATAAAGAACCTTAGAATATGTGTGGATTGTCATGCTGTGATAAAAATCATATCAATTGTTTATAAAAGGGAGATTATTGTGCGTGATAGAGCTAGATTTCACAGATTTAAAGAAGGTGTATGTTCTTGCAGAGATTATTGGTAA 1734 0.4625 MTAQYQLDSLLQKCSSLISMKQLQAHLITTGKFQFHPSRSKLLELCSISPAGDLSFAGQIFRRIQTPSTNDWNAVLRGLAQSPEPMQALSWYRAMSRSPQKVDALTCSFALKGCARALAFSEATQIHSQLLRFGFEADILLLTTLLDVYAKTGDLHAAHKVFDNMQKRDIASWNAMISGLAQGSRPNEAIGLFNRMKEEGWRPNEVTVLGAFSACSQLGALKHGQIIHAYVVDEKLDTNVIVCNAVIDMYAKCGFVDKAYSVFVSMSCKKSLVTWNTMIMALAMNGDGNQALELLDKMAADGVDPDAVSYLAALCACNHAGLVEEGVRLFDMMKGYGVKLNVKHYGSVVDLLGRAGRIKEACDIINSMPMIPDVVLWQSLLGACKIHGNVEVAEMASRKLVEMGSNHCGDFVLLSNVYAAQQRWYDVGRVREAMKIRDVRKVPGFSYTEIDGSIHKFVNGDQSHPSSKEIYAKLDEIKFRIKAYRYEAETNLVLHDIGEEDKENALNYHSEKLAVAYGLISTGDGTPIQVIKNLRICVDCHAVIKIISIVYKREIIVRDRARFHRFKEGVCSCRDYW* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0104 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Vra2g0104 577 Pfam E motif 387 447 IPR046848 -
Vra2g0104 577 Pfam PPR repeat family 169 214 IPR002885 -
Vra2g0104 577 Pfam PPR repeat family 271 316 IPR002885 -
Vra2g0104 577 Gene3D Tetratricopeptide repeat domain 169 225 IPR011990 GO:0005515
Vra2g0104 577 Pfam E+ motif 454 477 IPR046849 -
Vra2g0104 577 Gene3D Tetratricopeptide repeat domain 4 168 IPR011990 GO:0005515
Vra2g0104 577 Gene3D Tetratricopeptide repeat domain 320 505 IPR011990 GO:0005515
Vra2g0104 577 PANTHER BNAC07G48870D PROTEIN 2 570 - -
Vra2g0104 577 Gene3D Tetratricopeptide repeat domain 226 319 IPR011990 GO:0005515
Vra2g0104 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 168 IPR002885 -
Vra2g0104 577 Pfam PPR repeat 242 267 IPR002885 -
Vra2g0104 577 Pfam PPR repeat 345 368 IPR002885 -
Vra2g0104 577 Pfam DYW family of nucleic acid deaminases 486 577 IPR032867 GO:0008270
Vra2g0104 577 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 570 - -
Vra2g0104 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Vra2g0104 577 TIGRFAM PPR: pentatricopeptide repeat domain 308 342 IPR002885 -
Vra2g0104 577 TIGRFAM PPR: pentatricopeptide repeat domain 273 307 IPR002885 -
Vra2g0104 577 TIGRFAM PPR: pentatricopeptide repeat domain 172 205 IPR002885 -
Vra2g0104 577 TIGRFAM PPR: pentatricopeptide repeat domain 143 170 IPR002885 -
Vra2g0104 577 TIGRFAM PPR: pentatricopeptide repeat domain 242 269 IPR002885 -
Vra2g0104 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Vra2g0104 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 269 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0104 Vra-Chr2 820197 822069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0104 4 577 Glycoside Hydrolase AT3G49170 34.188 7.86e-116 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0104 - - gmx:100818600 1056.2