Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0116 ATGACATCTCAGTTTCAGTTTCAGCTGGATTCATTGTTTCAGAGATGTCACTCTCTCATTCACATCAAGCAGCTTCAAGCCCATCTCATCACCACCGGAAAATTCCACTTTCACCCTTCCCGCACCAAGCTTCTCGAACTCTGCGCCATCTCCCCCGCCGCCGACCTCTCCTTCGCCGCCCAAATCTTCCGCCGAATCCAAAATCCCTCCACCAACGACTGGAATGCCGTTCTTCGTGGCCTCGCCATGAGTCCCCAACCCACGCAGGCCATATCGTGGTACCGCAGCGTGTCACGCAGTCCCCAAAAGGTGGACGCGTTGACATGCTCCTTCGCTCTCAAGGGTTGCGCGCGCGCATTGACTTTCTCCGAGGCCACCCAGATTCATTCTCAGGTTCTGCGTTTCGGGTTTGATGCGGACACTTTGTTGGTCACCACTTTGTTGGATGTGTATGCGAAAACCGGTGATCTTGATGCTGCACAGAAGGTGTTTGATGAAATGCCAAAGCGGGACATTGCTTCCTGGAATGCTATGATTTCTGGGTTGGCGCAAGGGAGCCGACCCAATGAAGCTATTGCATTGTTTAAAAGGATGAAGGAAGAGGGGTGGAGGCCCAATGATGTAACTGTTCTCGGTGCTCTCTCTGCTTGTTCGCAATTGGGTGCTTTGAAGCAGGGTGAGATTGTTCATGGGTATATAGTGGATGAGAAGCTAGACATGAATGTCATTGTTTGTAACGCGGTAATTGATATGTATTCAAAGTGTGGGTTTGTTGATAAAGCTTATTCAGTCTTTCAGAACATGAGTTGCACCAAGAGTCTTATCACATGGAATACTATGATCATGGCGTTTGCAATGAATGGTGATGGATATAAGGCACTTGATCTGTTGGATCAAATGGCTCTAGATGGAGTGCATCCTGATGCGGTTTCTTATCTTGCTGCATTGTGTGCATGCAACCATGCTGGCTTGGTGGAAGAAGGGGTTAGATTGTTTGATTTGATGAAGGGATCTGTGGTGAAACCTAATATGAAACATTACGGGAGTGTTGTTGATTTGCTGGGTCGAGCCGGAAGGATCAAGGAAGCATATGATACTATAAACTCCATGCCTATGTTGCCTGATGTAGTACTCTGGCAGAGTTTGCTTGGGGCTAGCAAGACTTATGGGAATGTGGAAATGGCAGAGATGGCATCGAGGAAGCTGGTGGAGATGGGATCTAACAGCTGTGGGGATTTTGTCTTGTTATCGAACGTTTACGCTGCGCGACAGAGGTGGCATGATGTAAAGAGGGTGAGAGAAGCCATGATAACTAAAGATGTGAGGAAAGTGCCTGGATTTAGCTACACTGAAATAGATTGCAAGATACACAAGTTTATAAATGGTGATCAGAGTCACCCAAATTGGAAAGAGATTTATGCGAAGATGGATGAGATCAAGTTTAGGATTAAAGCCTACGGATATACAGCTAAGACTGATCTTGTGTTGCATGATATAGGGGAGGAGGACAAGGATAATGCTTTGAATTATCACAGTGAGAAGTTAGCTGTGGCATATGGTTTAATTAGCACAGTTAATGGGACACCAATTCAAGTCATAAAGAACCTTAGAATATGTGGGGATTGTCATACTGTGATAAAAATTATATCAAATATTTATAATAGGGAGATCATTGTGCGGGATCGAGCGCGATTTCACAGATTTAAAGGGGGAGTGTGTTCTTGTAGAGATTATTGGTAA 1740 0.4557 MTSQFQFQLDSLFQRCHSLIHIKQLQAHLITTGKFHFHPSRTKLLELCAISPAADLSFAAQIFRRIQNPSTNDWNAVLRGLAMSPQPTQAISWYRSVSRSPQKVDALTCSFALKGCARALTFSEATQIHSQVLRFGFDADTLLVTTLLDVYAKTGDLDAAQKVFDEMPKRDIASWNAMISGLAQGSRPNEAIALFKRMKEEGWRPNDVTVLGALSACSQLGALKQGEIVHGYIVDEKLDMNVIVCNAVIDMYSKCGFVDKAYSVFQNMSCTKSLITWNTMIMAFAMNGDGYKALDLLDQMALDGVHPDAVSYLAALCACNHAGLVEEGVRLFDLMKGSVVKPNMKHYGSVVDLLGRAGRIKEAYDTINSMPMLPDVVLWQSLLGASKTYGNVEMAEMASRKLVEMGSNSCGDFVLLSNVYAARQRWHDVKRVREAMITKDVRKVPGFSYTEIDCKIHKFINGDQSHPNWKEIYAKMDEIKFRIKAYGYTAKTDLVLHDIGEEDKDNALNYHSEKLAVAYGLISTVNGTPIQVIKNLRICGDCHTVIKIISNIYNREIIVRDRARFHRFKGGVCSCRDYW* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0116 579 Pfam E motif 389 449 IPR046848 -
Lja3g0116 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Lja3g0116 579 Pfam E+ motif 456 479 IPR046849 -
Lja3g0116 579 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 572 - -
Lja3g0116 579 Pfam PPR repeat family 171 216 IPR002885 -
Lja3g0116 579 Pfam PPR repeat family 273 318 IPR002885 -
Lja3g0116 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Lja3g0116 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 271 IPR002885 -
Lja3g0116 579 Gene3D Tetratricopeptide repeat domain 212 319 IPR011990 GO:0005515
Lja3g0116 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Lja3g0116 579 PANTHER BNAC07G48870D PROTEIN 9 572 - -
Lja3g0116 579 Pfam DYW family of nucleic acid deaminases 487 579 IPR032867 GO:0008270
Lja3g0116 579 SUPERFAMILY TPR-like 121 436 IPR011990 GO:0005515
Lja3g0116 579 Gene3D Tetratricopeptide repeat domain 321 501 IPR011990 GO:0005515
Lja3g0116 579 Gene3D Tetratricopeptide repeat domain 21 170 IPR011990 GO:0005515
Lja3g0116 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 170 IPR002885 -
Lja3g0116 579 TIGRFAM PPR: pentatricopeptide repeat domain 275 309 IPR002885 -
Lja3g0116 579 TIGRFAM PPR: pentatricopeptide repeat domain 310 343 IPR002885 -
Lja3g0116 579 TIGRFAM PPR: pentatricopeptide repeat domain 145 172 IPR002885 -
Lja3g0116 579 TIGRFAM PPR: pentatricopeptide repeat domain 244 269 IPR002885 -
Lja3g0116 579 TIGRFAM PPR: pentatricopeptide repeat domain 174 206 IPR002885 -
Lja3g0116 579 Pfam PPR repeat 244 268 IPR002885 -
Lja3g0116 579 Pfam PPR repeat 347 370 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0116 Lja-Chr3 1254889 1256668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0116 6 579 Glycoside Hydrolase AT3G49170 35.214 6.61e-124 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0116 - - gmx:100818600 1000.35