Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0117 ATGGCCATGGCTTCCTTCTCCAACATCTCCGCGCGTTCCTTCTCTCTCCCAACCCAAAACCACCACTCTTCTCCGCCGCCACCAACTCTCACCATCATATCCCGCCGTCGACATTCTTCTCCGAGCCTCTTCACTTCCTGTGCTCCTCCTGTTTCCCGATCCCCACGTCCTCACTTTCTCCACTCAAAGAATTCCCGCATTTTTTCAGCCGGGAACGGCGGAGGCGGAACCGGCGGAGGAGACGGAGGTGGAGGTGGAGGCGGAGGCGGTGGCGATGGTGAATCGGAGGACAGGGATCGCAACAGAGGAGAGGCGCTGCTGGTTCTCGCGGAGGTCGGGAAGCCGCTGGAGTATTTGCCGGCTGATTTAGCGGCGGCGATGGAGGCGGGGCGGATTCCGGGGTCAATTGTGAAGAGGTACTTCGAGCTCGAGAAATCGGCGGTGTTCCGGTGGCTGCTCAACTTCGGTGGGTTCAAGGAGAGGTTGCTGGCGGATGATTTGTTCCTCGCCAAGGTTGCCATGGAGTGTGGTGTTGGGATCTTCACAAAGACAGCTGCGGAGTTGGAGAAGCGCAAAGAAAATTTCACAAAGGAGCTTGATTTTGTTTGTGCTGATGTGGTAATGGCCATTGTGGCAGATTTTATGCTTGTGTGGCTTCCTGCTCCCACAGTTTCTCTCCGACCACCACTTGCTGTTAGTGCTGGAACTATTGCCAAATTCTTCTATGGCTGCCCTGATAATGCTTTCCAGGTGGCTTTGGCTGGAACCTCTTTTACACTTATACAGAGAATAGGTGCTATAGTGCGTAATGGAGCAAAGCTTTTCGCAGTTGGGACTGGTGCATCACTGATTGGTACAGGAGTAACAAATGGCTTGATTAATGCACGAAAAGTCGTTGATAAGTCTTTTGCTGATGAGGCTGAGGACATACCAATAGTATCAACAAGTATCGCCTATGGGGTTTACATGGCAGTATCTAGCAATCTAAGGTACCAAATACTAGCTGGAGTTATTGAACAACGAATTCTAGAACCGTTGCTGCACAAGCACAAGCTCATGCTAAGTGCAATTTGCTTTGCTGTTAGAACTGGAAATACATTCTTGGGCTCACTATTGTGGGTGGATTATGCTCGCTGGGTTGGGGTCCAGAAGATACGCGATTAG 1164 0.5137 MAMASFSNISARSFSLPTQNHHSSPPPPTLTIISRRRHSSPSLFTSCAPPVSRSPRPHFLHSKNSRIFSAGNGGGGTGGGDGGGGGGGGGGDGESEDRDRNRGEALLVLAEVGKPLEYLPADLAAAMEAGRIPGSIVKRYFELEKSAVFRWLLNFGGFKERLLADDLFLAKVAMECGVGIFTKTAAELEKRKENFTKELDFVCADVVMAIVADFMLVWLPAPTVSLRPPLAVSAGTIAKFFYGCPDNAFQVALAGTSFTLIQRIGAIVRNGAKLFAVGTGASLIGTGVTNGLINARKVVDKSFADEAEDIPIVSTSIAYGVYMAVSSNLRYQILAGVIEQRILEPLLHKHKLMLSAICFAVRTGNTFLGSLLWVDYARWVGVQKIRD* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0117 387 MobiDBLite consensus disorder prediction 41 99 - -
Lja3g0117 387 PANTHER OS05G0388600 PROTEIN 1 386 - -
Lja3g0117 387 Coils Coil 185 205 - -
Lja3g0117 387 Pfam Protein RETICULATA-related 160 337 IPR021825 -
Lja3g0117 387 PANTHER PROTEIN RETICULATA-RELATED 2, CHLOROPLASTIC-RELATED 1 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0117 Lja-Chr3 1256950 1260452 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0117 - - lja:Lj3g3v3678790.1 687.567