Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0112 ATGAGCTCTCAGTATCAATTGGATTCATTGTTGCAGAAATGCACCTCTCTGATTAGCATGAAGCAGCTCCAAGCCCATCTCATAACAACCGGCAAATTCCAATTCCACCCTTCCCGCGCAAAGCTCCTCGAGCTCTGCTCCATCTCCCCCGCCGGCGACCTCTCCTTCGCAGGCCAAATTTTCCGGCGAATCCAAACCCCTTCCACCAACGACTGGAACGCCGTTCTCCGAGGCCTGGCCCAAAGCCCAGAACCCATGCAGGCCCTCTCATGGTACCGCGCCATGTCACGCAGTCCCCAAAAGGTGGACGCTTTGACGTGCTCCTTCGCCCTCAAGGGCTGTGCGCGCGCATTGGCGTTCTCCGAAGCCACCCAGATTCATTCTCAGCTTCTGCGTTTTGGGTTCGAGGCTGATATATTGTTGCTGACCACTTTGTTGGATGTGTACGCCAAAACCGGTGATCTTGATGCTGCTCATAAGGTGTTTGATAATATGCAAAAGCGAGATATTGCTTCGTGGAATGCCATGATTTCTGGGTTGGCTCAAGGAAGCCAACCCAATGAGGCTATAGCTCTGTTCAACAGAATGAAGGAAGAGGGCTGGCGGCCTAATGAGGTAACTGTTCTTGGTGCACTGTCCGCTTGTTCGCAGTTGGGTGCTTTGAAACATGGCCAGATTATTCATGCCTATGTTGTGGACGAGAAGCTAGACACCAACGTGATTGTTTGTAACGCGGTTATTGATATGTATGCAAAATGCGGTTTTGTTGATAAAGCTTATTCCGTGTTTGTTAGTATGACCTGCAAGAAGAGTCTTGTCACGTGGAATACTATGATCATGGCGCTTGCGATGAATGGTGATGGCAATCAGGCGCTTGAGCTTTTGGATAAGATGGTTGTGGATGGAGTGGTTCCTGATGCGGTGTCGTATCTGGGTGCATTGTGTGCATGCAACCATGCTGGCTTGGTGGAAGAAGGGGTTAAGTTGTTTGATACGATGAAGGGGTGTGGAGTGAAACTTAATGTGAAGCATTATGGGAGTGTGGTTGATTTGTTGGGTCGAGCAGGGAGGATAAAAGAGGCGTTTGATATCATAAACTCAATGCCTATGTTGCCTGATGTGGTGCTCTGGCAGAGTTTGCTTGGGGCTAGTAAGATTCATGGGAACGTGGAAGTGGCTGAGATGGCATCTAGGAAGCTGGTGGAGATGGGATCTAACAATTGTGGGGATTTTGTGCTGTTATCAAATGTTTATGCAGCACAACAGAGATGGTGTGATGTTGGGAGGGTGAGGGAGGCCATGAAGATTAGGGATGTGAGGAAGGTGCCAGGGTTTAGTTACACAGAGATTGATTGCAAGATACACAAGTTTGTGAATGGTGATCAGAGTCATCCTTGTTCCAAAGAGATATATGCAAAACTTGATGAGATGAAGTTCAGGATTAAAGCTTATAGATATTCAGCAGAGACTGATCTTGTGCTGCATGATATTGGGGAGGAAGACAAGGAGAATGCGCTTAATTATCACAGTGAGAAGTTGGCTGTGGCATATGGTTTAATTAGCACAGGTGATGGAACACCTATTCAAGTCATAAAGAACCTTAGAATATGTGTGGATTGTCATGCTGTGATAAAAATTGTATCAATTGTTTATAACAGGGAGATTATTGTGCGTGATCGAGCCAGATTTCACAGATTTAAAGAAGGTGTATGTTCTTGCAGAGATTATTGGTAA 1734 0.4666 MSSQYQLDSLLQKCTSLISMKQLQAHLITTGKFQFHPSRAKLLELCSISPAGDLSFAGQIFRRIQTPSTNDWNAVLRGLAQSPEPMQALSWYRAMSRSPQKVDALTCSFALKGCARALAFSEATQIHSQLLRFGFEADILLLTTLLDVYAKTGDLDAAHKVFDNMQKRDIASWNAMISGLAQGSQPNEAIALFNRMKEEGWRPNEVTVLGALSACSQLGALKHGQIIHAYVVDEKLDTNVIVCNAVIDMYAKCGFVDKAYSVFVSMTCKKSLVTWNTMIMALAMNGDGNQALELLDKMVVDGVVPDAVSYLGALCACNHAGLVEEGVKLFDTMKGCGVKLNVKHYGSVVDLLGRAGRIKEAFDIINSMPMLPDVVLWQSLLGASKIHGNVEVAEMASRKLVEMGSNNCGDFVLLSNVYAAQQRWCDVGRVREAMKIRDVRKVPGFSYTEIDCKIHKFVNGDQSHPCSKEIYAKLDEMKFRIKAYRYSAETDLVLHDIGEEDKENALNYHSEKLAVAYGLISTGDGTPIQVIKNLRICVDCHAVIKIVSIVYNREIIVRDRARFHRFKEGVCSCRDYW* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0112 577 Gene3D Tetratricopeptide repeat domain 319 498 IPR011990 GO:0005515
Pvu11g0112 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Pvu11g0112 577 PANTHER BNAC07G48870D PROTEIN 4 570 - -
Pvu11g0112 577 Gene3D Tetratricopeptide repeat domain 101 224 IPR011990 GO:0005515
Pvu11g0112 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 168 IPR002885 -
Pvu11g0112 577 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 570 - -
Pvu11g0112 577 Pfam PPR repeat family 169 214 IPR002885 -
Pvu11g0112 577 Pfam PPR repeat family 271 311 IPR002885 -
Pvu11g0112 577 Pfam E motif 387 447 IPR046848 -
Pvu11g0112 577 SUPERFAMILY TPR-like 84 299 IPR011990 GO:0005515
Pvu11g0112 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Pvu11g0112 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Pvu11g0112 577 Pfam PPR repeat 345 369 IPR002885 -
Pvu11g0112 577 Pfam PPR repeat 242 268 IPR002885 -
Pvu11g0112 577 Gene3D Tetratricopeptide repeat domain 225 318 IPR011990 GO:0005515
Pvu11g0112 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 269 IPR002885 -
Pvu11g0112 577 Pfam E+ motif 454 477 IPR046849 -
Pvu11g0112 577 TIGRFAM PPR: pentatricopeptide repeat domain 242 268 IPR002885 -
Pvu11g0112 577 TIGRFAM PPR: pentatricopeptide repeat domain 273 307 IPR002885 -
Pvu11g0112 577 TIGRFAM PPR: pentatricopeptide repeat domain 309 342 IPR002885 -
Pvu11g0112 577 TIGRFAM PPR: pentatricopeptide repeat domain 172 205 IPR002885 -
Pvu11g0112 577 TIGRFAM PPR: pentatricopeptide repeat domain 143 170 IPR002885 -
Pvu11g0112 577 Pfam DYW family of nucleic acid deaminases 486 577 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0112 Pvu-Chr11 838715 840448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0112 2 577 Glycoside Hydrolase AT3G49170 34.242 2.59e-116 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0112 - - gmx:100818600 1050.04