Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi2g0302 . . . . Adu05g01101 . Aed11g1760 . Aev05g1018 . Ahy15g1076 . Aip05g01117 . . . . . Apr7g0546 . Arst5g01394 . Bach4g00072 . . . Bva08g00082 . Car08g00193 . Cca06g01837 . . . Dod02g1145 . . . . . . Gma11g00175 . . . . . . . . . . . Lal23g1548 . . . . . . . . Lasa2g02745 . . . . . . . . . . . Mal6g0246 . Mepo5g00310 . Mesa17g00305 . . . Mtr5g0260 . Phac2g00364 . Phco4g00262 . . . Psa2g4214 . Pste1g00193 . Pte14g01319 . . . Pumo8g02379 . Pvu2g1669 . . . Seca10g00290 . Spst2g00261 . Ssu2g2918 . . . Tpr2g3903 . Trre9g00323 . Tsu05g00239 . Vian10g00219 . . . Vimu7g02408 . Viun2g02647 . Vivi2g06104 . Vra11g0240 .
Vvi2g0303 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0304 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma05g01520 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0305 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0306 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma05g01532 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0307 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0308 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0309 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva11g02268 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0310 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0311 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Adu Adu05g01101 Chr05 14935819 14940208 +
Aed Aed11g1760 Chr11 21068227 21074555 +
Apr Apr7g0546 Chr7 11884197 11891492 -
Arst Arst5g01394 Chr5 14987082 14991543 +
Bach Bach4g00072 Chr4 499848 504441 -
Bva Bva08g00082 Chr08 424492 429477 -
Car Car08g00193 Chr08 1509578 1516132 -
Cca Cca06g01837 Chr06 33766919 33771585 +
Gma Gma11g00175 Chr11 1362435 1372080 -
Lal Lal23g1548 Chr23 15575260 15580239 +
Lasa Lasa2g02745 Chr2 509451176 509457680 -
Mal Mal6g0246 Chr6 3435371 3441280 +
Mepo Mepo5g00310 Chr5 2730025 2737338 -
Mesa Mesa17g00305 Chr17 3270825 3277217 -
Mtr Mtr5g0260 Chr5 2415935 2423973 -
Phac Phac2g00364 Chr2 1825732 1831092 -
Phco Phco4g00262 Chr4 1656646 1660806 -
Psa Psa2g4214 Chr2 423045834 423053227 +
Pste Pste1g00193 Chr1 706997 709180 +
Pte Pte14g01319 Chr14 34343054 34347953 -
Pumo Pumo8g02379 Chr8 61000262 61005263 +
Pvu Pvu2g1669 Chr2 30400494 30405307 +
Seca Seca10g00290 Chr10 2513157 2517952 -
Spst Spst2g00261 Chr2 1991434 1995957 -
Ssu Ssu2g2918 Chr2 90506830 90511763 +
Tpr Tpr2g3903 Chr2 41753654 41765563 +
Trre Trre9g00323 Chr9 2323431 2328264 -
Tsu Tsu05g00239 Chr05 1752670 1758514 -
Vian Vian10g00219 Chr10 1924946 1928487 -
Vimu Vimu7g02408 Chr7 20624699 20628748 -
Viun Viun2g02647 Chr2 32137322 32142222 +
Vivi Vivi2g06104 Chr2 194720981 194727654 -
Vra Vra11g0240 Chr11 1630037 1635080 -
Vvi Vvi2g0302 Chr2 2441565 2448038 -
Adu Adu05g01101 Chr05 14935819 14940208 +
Aed Aed11g1760 Chr11 21068227 21074555 +
Aev Aev05g1018 Chr05 7162877 7171881 +
Ahy Ahy15g1076 Chr15 16667448 16672056 +
Aip Aip05g01117 Chr05 16095569 16100363 +
Apr Apr7g0546 Chr7 11884197 11891492 -
Arst Arst5g01394 Chr5 14987082 14991543 +
Bach Bach4g00072 Chr4 499848 504441 -
Bva Bva08g00082 Chr08 424492 429477 -
Car Car08g00193 Chr08 1509578 1516132 -
Cca Cca06g01837 Chr06 33766919 33771585 +
Dod Dod02g1145 Chr02 14221691 14229609 +
Gma Gma11g00175 Chr11 1362435 1372080 -
Lal Lal23g1548 Chr23 15575260 15580239 +
Lasa Lasa2g02745 Chr2 509451176 509457680 -
Mal Mal6g0246 Chr6 3435371 3441280 +
Mepo Mepo5g00310 Chr5 2730025 2737338 -
Mesa Mesa17g00305 Chr17 3270825 3277217 -
Mtr Mtr5g0260 Chr5 2415935 2423973 -
Phac Phac2g00364 Chr2 1825732 1831092 -
Phco Phco4g00262 Chr4 1656646 1660806 -
Psa Psa2g4214 Chr2 423045834 423053227 +
Pste Pste1g00193 Chr1 706997 709180 +
Pte Pte14g01319 Chr14 34343054 34347953 -
Pumo Pumo8g02379 Chr8 61000262 61005263 +
Pvu Pvu2g1669 Chr2 30400494 30405307 +
Seca Seca10g00290 Chr10 2513157 2517952 -
Spst Spst2g00261 Chr2 1991434 1995957 -
Ssu Ssu2g2918 Chr2 90506830 90511763 +
Tpr Tpr2g3903 Chr2 41753654 41765563 +
Trre Trre9g00323 Chr9 2323431 2328264 -
Tsu Tsu05g00239 Chr05 1752670 1758514 -
Vian Vian10g00219 Chr10 1924946 1928487 -
Vimu Vimu7g02408 Chr7 20624699 20628748 -
Viun Viun2g02647 Chr2 32137322 32142222 +
Vivi Vivi2g06104 Chr2 194720981 194727654 -
Vra Vra11g0240 Chr11 1630037 1635080 -
Vvi Vvi2g0303 Chr2 2451946 2455818 +
Vvi Vvi2g0304 Chr2 2458979 2463893 +
Gma Gma05g01520 Chr05 37031886 37035738 +
Vvi Vvi2g0305 Chr2 2465968 2467958 +
Vvi Vvi2g0306 Chr2 2468149 2468887 +
Gma Gma05g01532 Chr05 37131187 37138439 -
Vvi Vvi2g0307 Chr2 2471099 2473463 +
Vvi Vvi2g0308 Chr2 2474813 2477481 -
Vvi Vvi2g0309 Chr2 2479922 2482621 +
Bva Bva11g02268 Chr11 18233939 18236752 +
Vvi Vvi2g0310 Chr2 2488355 2489611 +
Vvi Vvi2g0311 Chr2 2496534 2497943 -
Pste Pste1g00193 Chr1 706997 709180 +
Vivi Vivi2g06104 Chr2 194720981 194727654 -