Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0303 ATGGCAAGGTACAATCTGGTGGGTGGTGGGGGTGCAGACGACTTTGCCTTGCCTTCCCAGAGGCTCATCGATGCGGCTCTGCAAGGAGATATCAACTGGGTGTCCCAGAGTTTGATGTCCCAAGCTGTGGATGTCAACTATATTGGGACTGTTAGTTTGAGAGTGAAGTGCCTGGAGTTCTTACTCAGAGAGGAAGAGGCAGATGAAGTTGAGATTCAGTACAGGGATTTTGTCACTGATGTTACTCCTCTTTTTGCTGCTGCTCATTCTGGCCATGTTTCCATTGTCAGAAAGCTACTGTCAGCTGGAGCTGATGTTAACCAGGAGTTGTTTCGAGGCTTTGCAACAACTGCTGCTGCTCGTGAAGGTCATTGTGCCCTTCTTGACATGCTTCTCAAGGCAGGTGCTTCTCAATCAGCTTGTGAGCATGCTTTGCTGGAAGCTTGCCTTTGTGGTCAGGCTAGAGCTGCGGAACTGTTGATCCGCTCAGAGATGATAGGACCTTCTGTGGCTCAGCATGCACTTGTGTCTGCAAGCAGCAGAGGTTATGTTGATGTAGCTGATACTTTAATCAAGAATGGAGTGGACATAAATTGTGCGGATAGGGTTCTATTACGGTCTCTAAAGCCTGCATTGCATGCTAACATAGATTGTACACCCTTGGTAGCTGCTGTTGTGAGCCGACAAGTGTCTATGGCTAAGTACTTGTTGGAGGCAGGTGCAAAAACTGATTGCTATGTAAGGCTTGGAGCTTGGTCATGGGATATCTTCTCTGGTGAAGAGTTGAGAGTCGGAGGATGTTTGGGTGAGCCATATGATGAAGTATGGTGTGCGGTTGAGTATTATGAAGCTAGTGGAAAAATTTTAAGCCTTTTTCTTCAGCATCAAATTTCATCCCTTGAAAGTCAACAACAGGGCAGAACTCTTCTTTGCCATGCCATTCTCTGCCAGAATTCGGATGCTGTGGGTGTGCTTCTTGATGCTGGTGCTGATGTTGAGTTTCCTATAAGAACCAAGAAGGGGCATGAGTCCCGTCCTCTTCATTTGGCTGCTAGACTGGGTTGCCTTTCCATTCTGAAACGGTTGATCAAACATGGATGCCAAGTCGATGCTAGGACTGAGACAGGTGATACAGCTCTGATGGTGGCTGCGAAAGCTGATCAGGCTGATTGTTTCTTAGAGCTAATTATTGCAGGTGCTGATTTGGGTCTGATCAACAATAATGGAGACAGTGCAGTGCAATTGGCAAAGAAAAGTTTGTTCAGATCCTCTACGGCTGATATCTTTCGGCGTGCAATCATCACTGGAACAAAAATCTGCTCCAGCAATCTTGAGGTTTTCTCTTTGCTGCATTTTCTCACAGGAATTGGTAATACAGTGCTCCTTCAGATGATCCTCCAACAGTTGGGAGAAGGTATCAGTACACATGATGGTTTAGGTTTGACACCCATTCTGGTTGCATTAAAGGCAGGCCATATTGAAGCTTTCCGTCTCCTTATCATGGCTGGGGCAGATATTAGGGTGAAGAGCAAAGATGGGCAGACAGTGGTGTCTGTCCTGCAGCATCGAGCCTATTCTGACGATCGAAATCGGTTTGAAGAAATATTGCTTGATGCCATGCTTGCTCATGTACTGACAGGCTACTCAGAATTCAAAGCGCTTCATTTTGCAGCACGCATGGGAAACTCGTCTGCACTACTTCAGCTTTTGAAAATGGGATTTCCAATCAATTCTCTGGATGAAAATGGGTATTCACCTCTAATGCTAGCAGCCAAGGAAGGTCATGCTGATGCCTGCAAGCTGCTGTTGCAAAGAGGCGCTGATTGTGGAATTGTCAGTTGTGAGGGAGAGATGGCCTTGTCTCTTTCTAGGAAAAGCAATAAATGTAAGATTGCAGAGGGTGTGATTCTTGATTACCTGGCTCATTCTCATGTGCTGCTTGGGGAGAAGCTGCGCAAGCACACCCGAGAGGGAAGAGGCTCTCCCCATGTAAAGGTTGTCCGGATGCTCAAATCTGGATTGTTGACATGGGGGAAGTCAAGTCGGAGGAATGTTGTCTGTAATGAGGCAGTGGCAGGACCAAGTGCAAGCTTTTTAAAGAATAGGAGAAAGGATGCTGGGGAAGAAAACAGGGAAGTTTTCAGGGTGTTGACAGAGACCGGGAGAGAGATACACTTTGAGGCAGCCTCTGCTGCTAGTTTGGAACTCTGGGTTCGCGGCATTAACCTCATTACAAGGGATGCAACTTCTGGGGCTTGGCTATCAAATACTATGGAGGGTGCATTAAGCTGA 2292 0.4682 MARYNLVGGGGADDFALPSQRLIDAALQGDINWVSQSLMSQAVDVNYIGTVSLRVKCLEFLLREEEADEVEIQYRDFVTDVTPLFAAAHSGHVSIVRKLLSAGADVNQELFRGFATTAAAREGHCALLDMLLKAGASQSACEHALLEACLCGQARAAELLIRSEMIGPSVAQHALVSASSRGYVDVADTLIKNGVDINCADRVLLRSLKPALHANIDCTPLVAAVVSRQVSMAKYLLEAGAKTDCYVRLGAWSWDIFSGEELRVGGCLGEPYDEVWCAVEYYEASGKILSLFLQHQISSLESQQQGRTLLCHAILCQNSDAVGVLLDAGADVEFPIRTKKGHESRPLHLAARLGCLSILKRLIKHGCQVDARTETGDTALMVAAKADQADCFLELIIAGADLGLINNNGDSAVQLAKKSLFRSSTADIFRRAIITGTKICSSNLEVFSLLHFLTGIGNTVLLQMILQQLGEGISTHDGLGLTPILVALKAGHIEAFRLLIMAGADIRVKSKDGQTVVSVLQHRAYSDDRNRFEEILLDAMLAHVLTGYSEFKALHFAARMGNSSALLQLLKMGFPINSLDENGYSPLMLAAKEGHADACKLLLQRGADCGIVSCEGEMALSLSRKSNKCKIAEGVILDYLAHSHVLLGEKLRKHTREGRGSPHVKVVRMLKSGLLTWGKSSRRNVVCNEAVAGPSASFLKNRRKDAGEENREVFRVLTETGREIHFEAASAASLELWVRGINLITRDATSGAWLSNTMEGALS* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0303 763 ProSiteProfiles Ankyrin repeat profile. 342 374 IPR002110 GO:0005515
Vvi2g0303 763 ProSiteProfiles Ankyrin repeat profile. 375 407 IPR002110 GO:0005515
Vvi2g0303 763 ProSiteProfiles Ankyrin repeat profile. 479 511 IPR002110 GO:0005515
Vvi2g0303 763 Gene3D - 274 427 IPR036770 -
Vvi2g0303 763 ProSiteProfiles Ankyrin repeat region circular profile. 479 511 - -
Vvi2g0303 763 SUPERFAMILY Ankyrin repeat 22 246 IPR036770 -
Vvi2g0303 763 ProSiteProfiles Ankyrin repeat region circular profile. 79 107 - -
Vvi2g0303 763 ProSiteProfiles Ankyrin repeat profile. 79 107 IPR002110 GO:0005515
Vvi2g0303 763 SMART ANK_2a 582 611 IPR002110 GO:0005515
Vvi2g0303 763 SMART ANK_2a 216 245 IPR002110 GO:0005515
Vvi2g0303 763 SMART ANK_2a 375 404 IPR002110 GO:0005515
Vvi2g0303 763 SMART ANK_2a 479 508 IPR002110 GO:0005515
Vvi2g0303 763 SMART ANK_2a 305 334 IPR002110 GO:0005515
Vvi2g0303 763 SMART ANK_2a 342 371 IPR002110 GO:0005515
Vvi2g0303 763 SMART ANK_2a 170 199 IPR002110 GO:0005515
Vvi2g0303 763 SMART ANK_2a 79 108 IPR002110 GO:0005515
Vvi2g0303 763 SMART ANK_2a 549 578 IPR002110 GO:0005515
Vvi2g0303 763 Pfam Ankyrin repeats (3 copies) 344 403 IPR002110 GO:0005515
Vvi2g0303 763 Pfam Ankyrin repeats (3 copies) 550 611 IPR002110 GO:0005515
Vvi2g0303 763 SUPERFAMILY Ankyrin repeat 293 622 IPR036770 -
Vvi2g0303 763 ProSiteProfiles Ankyrin repeat region circular profile. 582 608 - -
Vvi2g0303 763 Pfam Ankyrin repeat 82 108 IPR002110 GO:0005515
Vvi2g0303 763 Gene3D - 523 635 IPR036770 -
Vvi2g0303 763 Gene3D - 428 522 IPR036770 -
Vvi2g0303 763 ProSiteProfiles Ankyrin repeat profile. 582 608 IPR002110 GO:0005515
Vvi2g0303 763 ProSiteProfiles Ankyrin repeat region circular profile. 342 374 - -
Vvi2g0303 763 ProSiteProfiles Ankyrin repeat profile. 170 202 IPR002110 GO:0005515
Vvi2g0303 763 PANTHER ANKYRIN REPEAT-CONTAINING 19 731 - -
Vvi2g0303 763 Gene3D - 141 258 IPR036770 -
Vvi2g0303 763 Gene3D - 16 140 IPR036770 -
Vvi2g0303 763 ProSiteProfiles Ankyrin repeat profile. 549 581 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0303 Vvi-Chr2 2451946 2455818 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0303 553 620 Acyl Lipid Metabolism Gene Families AT5G53470 33.824 3.88e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0303 - - vvi:100242748 1494.18