Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0309 ATGGCGTCTTCAGTCTGCAACTATCAATCTCTTCTTCTTCCCAAGAATGTGAAGCTCTCGTCTTCATCGTCTCTGAACTTATCTTCAGTTCCCAACATTTCGCTCCAATTCCTTCCCACAAAAAAATGCCCATTCCTTTCTTCTACTCCGAGGGCTCTCACTGTCATCTCTATGGCCCCACCTAAGCCCGGTGGTAAATCCAAGAAAGTGACTGGAATGATTAAGCTGGCTCTGGAGGCGGGGAAGGCCACTCCGGCACCGCCCGTCGGGCCAGCGCTGGGTTCCAAGGGTGTGAATATCATGGCTTTCTGTAAGGATTACAATGCTAGGACCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATGATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTCCTTAAGGCTGCAGGAGCGGAGAAAGGCGCAAAAGACCCAAAGCAAGAGAAGGTGGGGAAGATCACAATTGAGCAATTGCGAACCATTGCAACTGAAAAGCTGCCAGACTTGAACTGCACTAGTATTGAATCAGCCATGAGAATTATTGCTGGCACTGCTGCTAACATGGGCATTGAAGTTGATCCTCCTGTTCTTGAACCCAAAAAGAAGGTCATTTTATAG 654 0.4786 MASSVCNYQSLLLPKNVKLSSSSSLNLSSVPNISLQFLPTKKCPFLSSTPRALTVISMAPPKPGGKSKKVTGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGAEKGAKDPKQEKVGKITIEQLRTIATEKLPDLNCTSIESAMRIIAGTAANMGIEVDPPVLEPKKKVIL* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0309 217 FunFam 50S ribosomal protein L11 135 206 - -
Vvi2g0309 217 SUPERFAMILY Ribosomal protein L11, C-terminal domain 132 205 IPR036769 -
Vvi2g0309 217 Pfam Ribosomal protein L11, N-terminal domain 74 131 IPR020784 -
Vvi2g0309 217 NCBIfam 50S ribosomal protein L11 68 205 IPR006519 GO:0003735|GO:0005840|GO:0006412
Vvi2g0309 217 FunFam 50S ribosomal protein L11 67 134 - -
Vvi2g0309 217 Pfam Ribosomal protein L11, RNA binding domain 136 204 IPR020783 GO:0003735|GO:0005840|GO:0006412
Vvi2g0309 217 SMART rl11c 74 205 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vvi2g0309 217 CDD Ribosomal_L11 74 204 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vvi2g0309 217 Hamap 50S ribosomal protein L11 [rplK]. 70 206 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vvi2g0309 217 PANTHER 60S RIBOSOMAL PROTEIN L12 64 206 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vvi2g0309 217 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 65 149 IPR036796 -
Vvi2g0309 217 ProSitePatterns Ribosomal protein L11 signature. 191 205 IPR020785 GO:0003735|GO:0005840|GO:0006412
Vvi2g0309 217 Gene3D - 137 217 IPR036769 -
Vvi2g0309 217 Gene3D - 65 136 IPR036796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0309 Vvi-Chr2 2479922 2482621 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0309 K02867 - vvi:100263279 388.267