Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2918 ATGCGTAGCCGGGGATCACAAAGCCGGCTATCGGGCAACTCTTTTGGATCACGAGTTTCTGCTCTCATGCTTGCCATGATTGCTACCATGGCTACAATTTACGTTGCCGGCAGGCTATGGCAGGACGCGGAAAGTAGGGCTTATTTAATTGAAGAGCTTGAAAAAAGAACTGGTCAGGGTCAATCTGCCGTATCTGTTGATGATACACTGAAAGTTATAGCCTGCAGGGAACAACATAAAAAGTTGTCTGCCCTTGAGACTGAACTAGCTGCAGCTAGACAGGAAGGTTTTGTTCCAAAGCACTTGTCAGGAAATGATGGGAAGCATCCTACAAAGAAGGTACTTTCAGTTGTAGGAGTCATGACAACCTTTGGTCGAAAAAAGAACCGAGATGCAATCCGTAAGGCTTGGATGCCAACAGCAGGTACGGCTGTGAGAAAAATGGCTGATAAGAAAGGCATCACTGTGCGATTTGTAATAGGAAAAAGTGCAAATCGTGGAGACAGTTTGGACAAAGAAATTGAAACAGAAAGCAGTCAGACCAATGACTTCATCATTCTtGATAATCAAGTGGAAGCACCTGAAGAAAAAgccaaaaagataaaatcattCTTCATTTATGCAGTGGGCAACTGGGATGCTGAATTTTATGCTAAGGTCAATGATGATGTCTATGTTAATCTTGATGCCCTTGGAGGAGTGCTAACTTCTCATTTGGACAAGCCCCGTGTTTATATTGGTTGTATGAAATCAGGACAAGTTTTCTCTGAGCCGACACATAAATGGCATGAGCCAGACTGGTGGAAATTTGGTGATGGAAAATCATACTTTCGACATGCTTCAGGTGAGGTCTATGTCATTTCAAAAGCATTGGCTCAGTTTATTTCAATAAACAGATTTATTCTTCGTACATATGCACATGATGATGTAAGCATTGGATCATGGTTTATTGGGCTTGATGTACAGCACCTTGATGAAACAAAGTTTTGCTGCTCCTCCTGGTCCCCAGGTAACAGTAACAGGCTTTTAGGCTGCAATAGGGcaagtattataaataatGGGCAATTTGTGCAGCAGTATGATGACTTTCCATTGACAATTAGTGACATACGAATGATGTATAGCAAACAGAAACCTTTTACTTCCTCCATCATCATTTTTGTCTCAGttGAAACGTCCATGTTGAATCCACTCTTCATTGTAGGCTGGTCGTTCTTAGATTAG 1224 0.4109 MRSRGSQSRLSGNSFGSRVSALMLAMIATMATIYVAGRLWQDAESRAYLIEELEKRTGQGQSAVSVDDTLKVIACREQHKKLSALETELAAARQEGFVPKHLSGNDGKHPTKKVLSVVGVMTTFGRKKNRDAIRKAWMPTAGTAVRKMADKKGITVRFVIGKSANRGDSLDKEIETESSQTNDFIILDNQVEAPEEKAKKIKSFFIYAVGNWDAEFYAKVNDDVYVNLDALGGVLTSHLDKPRVYIGCMKSGQVFSEPTHKWHEPDWWKFGDGKSYFRHASGEVYVISKALAQFISINRFILRTYAHDDVSIGSWFIGLDVQHLDETKFCCSSWSPGNSNRLLGCNRASIINNGQFVQQYDDFPLTISDIRMMYSKQKPFTSSIIIFVSVETSMLNPLFIVGWSFLD 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2918 407 Coils Coil 75 95 - -
Ssu2g2918 407 Pfam Domain of unknown function (DUF4094) 17 94 IPR025298 -
Ssu2g2918 407 PANTHER HEXOSYLTRANSFERASE 1 338 - -
Ssu2g2918 407 Gene3D - 106 343 - -
Ssu2g2918 407 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 1 338 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu2g2918 407 Pfam Galactosyltransferase 129 325 IPR002659 GO:0006486|GO:0016020|GO:0016758
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2918 Ssu-Chr2 90506830 90511763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2918 22 335 Glycosyltransferase AT5G53340 64.968 8.52e-160 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2918 K20854 - gmx:100802753 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2918 2 90506830 90511763 Ssu2g2918 2 90506830 90511763 ECH