Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1168 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1169 . . . Aed5g0829 Aev04g2574 . Ahy13g1527 Aip03g01715 . Amo13g2006 Amo03g0609 Apr3g1073 Arst3g01784 . . . Car06g03159 Cca04g01106 . Dod03g2141 . . . Gma06g02643 Gso12g0905 Gso6g2427 . . Lal9g0422 . Lan8g1494 . . . . . . . Lja3g1178 . . . . . . Phco9g01279 . . Pste1g03365 Pumo11g01103 . Seca4g04996 Spst11g01007 Ssu3g2159 . . . Tsu06g01102 . . Vimu5g01475 Viun11g01451 . Vra2g1017
Pvu11g1170 . . . . . . . . . Amo13g2042 . . Arst3g01835 . . . . . . . . . . . . . . Lal2g0469 . Lan7g0486 . . . . . . . . . . . . . . . Phco9g01281 . . . . . . . Ssu3g2136 . . . . . . . . Vivi5g03277 .
Pvu11g1171 . . . . . . . . . . . . Arst3g01833 . . . . . . . . . . . . . . . Lal9g0426 . . . . Lasa7g01122 . . . . . . . Mesa13g03919 . Mtr4g1233 . Phco9g01283 . . Pste1g03413 . . . . Ssu3g2137 . . Trre7g01132 . . . . . . .
Pvu11g1172 . . . . . . . . . . . . Arst3g01832 . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g1200 . . Mesa13g03920 . Mtr4g1232 . Phco9g01284 . . . . . . . Ssu3g2138 . . . . . . . . Vivi5g01710 .
Pvu11g1173 . . . . . . . . . . . . Arst3g01830 . . . . . . . . . . . . . . . . . . . Lapu11g00139 . . . . . Lja3g1201 . . Mesa13g03921 . Mtr4g1231 . Phco9g01285 . . . . . . . Ssu3g2139 . . . . . . . . . .
Pvu11g1174 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01287 . . . . . . . . . . . . . . . . . .
Pvu11g1175 . . . . . . . . . . . . Arst3g01827 . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g1202 . . . . . . Phco9g01288 . . . . . . . Ssu3g2141 . . . . . . . . . .
Pvu11g1176 . . . . . . . . . . . . Arst3g01819 . . . Car06g02028 . . . . . . . . . . . . . . . . Lasa7g01134 . . . . Lja3g1311 . . . . . Phac11g00247 Phco9g01289 . Psa7g3896 . . . . . Ssu3g2142 . . . . . . . . . .
Pvu11g1177 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Lja Lja3g1311 Chr3 13725813 13728586 +
Vivi Vivi5g03277 Chr5 123290762 123299603 +
Phac Phac11g00247 Chr11 1511288 1514944 +
Psa Psa7g3896 Chr7 324292007 324295796 +
Pvu Pvu11g1168 Chr11 15333365 15333922 +
Pvu Pvu11g1169 Chr11 15339054 15339774 +
Aed Aed5g0829 Chr5 6262036 6262413 +
Aev Aev04g2574 Chr04 25492953 25493306 +
Ahy Ahy13g1527 Chr13 21658430 21659191 +
Aip Aip03g01715 Chr03 20923697 20924427 +
Amo Amo13g2006 Chr13 30583889 30584812 +
Amo Amo03g0609 Chr03 11216763 11217941 -
Apr Apr3g1073 Chr3 25358371 25358950 -
Arst Arst3g01784 Chr3 20865464 20866095 +
Car Car06g03159 Chr06 57986804 57987525 -
Cca Cca04g01106 Chr04 12541129 12542308 +
Dod Dod03g2141 Chr03 50544532 50545854 -
Gma Gma06g02643 Chr06 49891309 49892837 -
Gso Gso12g0905 Chr12 10494063 10495039 +
Gso Gso6g2427 Chr6 45899432 45900264 -
Lal Lal9g0422 Chr9 2779166 2779510 +
Lan Lan8g1494 Chr8 21997117 21997853 -
Lja Lja3g1178 Chr3 12257589 12258558 +
Phco Phco9g01279 Chr9 13262609 13262956 +
Pste Pste1g03365 Chr1 15502125 15507097 +
Pumo Pumo11g01103 Chr11 39426391 39431113 -
Seca Seca4g04996 Chr4 93165782 93166123 -
Spst Spst11g01007 Chr11 34207498 34207845 -
Ssu Ssu3g2159 Chr3 70408937 70409284 -
Tsu Tsu06g01102 Chr06 9998232 9999629 -
Vimu Vimu5g01475 Chr5 25727392 25727742 -
Viun Viun11g01451 Chr11 30704352 30704967 -
Vra Vra2g1017 Chr2 10898949 10899644 +
Pvu Pvu11g1170 Chr11 15358882 15365703 -
Amo Amo13g2042 Chr13 31652481 31660845 +
Arst Arst3g01835 Chr3 21581691 21587192 +
Lal Lal2g0469 Chr2 2839832 2852705 +
Lan Lan7g0486 Chr7 3554453 3561346 +
Phco Phco9g01281 Chr9 13303361 13308667 -
Ssu Ssu3g2136 Chr3 69865003 69870303 -
Vivi Vivi5g03277 Chr5 123290762 123299603 +
Pvu Pvu11g1171 Chr11 15380181 15387017 -
Arst Arst3g01833 Chr3 21550816 21555062 +
Lal Lal9g0426 Chr9 2801937 2805984 +
Lasa Lasa7g01122 Chr7 185705972 185706505 -
Mesa Mesa13g03919 Chr13 56209392 56213126 -
Mtr Mtr4g1233 Chr4 17929264 17934946 +
Phco Phco9g01283 Chr9 13348106 13358905 -
Pste Pste1g03413 Chr1 15828600 15834387 +
Ssu Ssu3g2137 Chr3 69888860 69895869 -
Trre Trre7g01132 Chr7 7637913 7643225 -
Pvu Pvu11g1172 Chr11 15404868 15406131 -
Arst Arst3g01832 Chr3 21538945 21540529 +
Lja Lja3g1200 Chr3 12644276 12645836 -
Mesa Mesa13g03920 Chr13 56223512 56225130 -
Mtr Mtr4g1232 Chr4 17894228 17896614 +
Phco Phco9g01284 Chr9 13374212 13375212 -
Ssu Ssu3g2138 Chr3 69938078 69939272 -
Vivi Vivi5g01710 Chr5 60213201 60214470 +
Pvu Pvu11g1173 Chr11 15416195 15417439 +
Arst Arst3g01830 Chr3 21502246 21504891 -
Lapu Lapu11g00139 Chr11 3726083 3727184 +
Lja Lja3g1201 Chr3 12651935 12654115 +
Mesa Mesa13g03921 Chr13 56231338 56232114 +
Mtr Mtr4g1231 Chr4 17887720 17888736 -
Phco Phco9g01285 Chr9 13385634 13386458 +
Ssu Ssu3g2139 Chr3 69957152 69957973 +
Pvu Pvu11g1174 Chr11 15433827 15434615 +
Phco Phco9g01287 Chr9 13404886 13405230 +
Pvu Pvu11g1175 Chr11 15490710 15492967 -
Arst Arst3g01827 Chr3 21417764 21419872 +
Lja Lja3g1202 Chr3 12663773 12665885 -
Phco Phco9g01288 Chr9 13427124 13452599 -
Ssu Ssu3g2141 Chr3 70010398 70014009 -
Pvu Pvu11g1176 Chr11 15642200 15645563 +
Arst Arst3g01819 Chr3 21273962 21276526 -
Car Car06g02028 Chr06 20252454 20259758 -
Lasa Lasa7g01134 Chr7 196772317 196773030 +
Lja Lja3g1311 Chr3 13725813 13728586 +
Phac Phac11g00247 Chr11 1511288 1514944 +
Phco Phco9g01289 Chr9 13522270 13522992 +
Psa Psa7g3896 Chr7 324292007 324295796 +
Ssu Ssu3g2142 Chr3 70044266 70044967 +
Pvu Pvu11g1177 Chr11 15713403 15713948 -