Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2139 ATGTCAATTTCATCCTCTCTCACCTTGACACCCACCACCCCAAGAGTCGCGGCAACGCAAACTTTCCACTATTCCCAACCCACCCCTCTCCGATTCAACCCAATTTCCAGACCTTCCCCTCTGCGCGCCTTCCTCTCCCTCGCGACACGCGCGCCCACGCGCCGCCCCCGCCCCGCGGCGCCCATATGCCTCTTCACCGGCATCGTCGAGGAGATTGGCACCGTGAAGCATCTGGGCCCGGCCCCGCGCGGCGGCTTCGACCTGAAAATAGCGGCCTCGACGGTCCTCGACGGCGTCCGCCTCGGCGACAGCATCGCCGTGAACGGCGCGTGCCTCACGGTGGCGGAGTTCGACGCCGAAGTGTCCGACTTCACGGTGGGGCTGGCGCCGGAGACGCTGCGGAAGACGTCGCTGTCGGAGCTGGAGCCCGGGTCGGCGGTGAACCTGGAGCGGGCGGTGACGCCGGCGAGCCGCATGGGCGGGCACTTCGTGCAGGGTCACGTGGACGGCACGGGGGAGATCGTGTCGATGGTTCCGGAAGGGGATTCGCTCTGGGTGAAGGTGAGGGCCGAGGAGGGTTTGTTAAAGTACGTCGTGCCTAAGGGGTTTATCGCTGTGGACGGGACTAGCTTAACTGTGGTGGACGTGCTTGATGACGAAGGGTGTTTCAATTTCATGTTGGTGGCTTACACGCAGCAGAAGGTGGTGATTCCTCTGAAGAAGGCTGGGGACAAGGTGAACCTCGAGGTGGATATTCTCGGCAAGTATGTGGAGAGGCTTCTCGGTAGTGGTTTTGTTTCATCCTATGCTAATAATTCTTGA 822 0.6168 MSISSSLTLTPTTPRVAATQTFHYSQPTPLRFNPISRPSPLRAFLSLATRAPTRRPRPAAPICLFTGIVEEIGTVKHLGPAPRGGFDLKIAASTVLDGVRLGDSIAVNGACLTVAEFDAEVSDFTVGLAPETLRKTSLSELEPGSAVNLERAVTPASRMGGHFVQGHVDGTGEIVSMVPEGDSLWVKVRAEEGLLKYVVPKGFIAVDGTSLTVVDVLDDEGCFNFMLVAYTQQKVVIPLKKAGDKVNLEVDILGKYVERLLGSGFVSSYANNS 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2139 273 CDD Riboflavin_synthase_like 65 253 IPR001783 -
Ssu3g2139 273 Gene3D - 167 269 IPR023366 -
Ssu3g2139 273 ProSiteProfiles Riboflavin synthase alpha chain lumazine-binding repeat profile. 163 261 IPR026017 -
Ssu3g2139 273 PANTHER RIBOFLAVIN SYNTHASE 62 271 - -
Ssu3g2139 273 Pfam Lumazine binding domain 66 152 IPR026017 -
Ssu3g2139 273 Pfam Lumazine binding domain 165 251 IPR026017 -
Ssu3g2139 273 Gene3D - 64 154 IPR023366 -
Ssu3g2139 273 SUPERFAMILY Riboflavin synthase domain-like 158 262 IPR017938 -
Ssu3g2139 273 TIGRFAM ribE: riboflavin synthase, alpha subunit 64 261 IPR001783 -
Ssu3g2139 273 ProSiteProfiles Riboflavin synthase alpha chain lumazine-binding repeat profile. 64 162 IPR026017 -
Ssu3g2139 273 SUPERFAMILY Riboflavin synthase domain-like 64 153 IPR017938 -
Ssu3g2139 273 PANTHER RIBOFLAVIN SYNTHASE ALPHA CHAIN 62 271 IPR001783 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2139 K00793 - gmx:100809163 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2139 3 69957152 69957973 Ssu3g2139 3 69957152 69957973 ECH