Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01289 ATGGTCTTAGATAATTTGGAGGAGACTGTGTCCCAAAACGAAAAGTGGAAATCTTCCAATGAAGTCATTGCAGATTCTGATATAAATGACTCTAGTGGCTTTGATTGCAACATTTGCCTTGAGTGTGTGCAAGATCCAGTGGTCACACTTTGTGGTCATCTTTATTGCTGGCCCTGCATATACAAATGGCTTCATTTTCAACGTACCTCTATAGATAGTGAAAAGCAACAAAATCCACAATGCCCAGTATGCAAATCAGAAGTTTCTCAATCCTCCCTTGTTCCATTATATGGTCGTGGCCTAATAGCGAGACCTTCTAAGGGGAAGACACATCAAGTTGGGATTGTCATACCACAAAGACCTTATGGTCCAAGGTCATTGAGTACTAGCAGTGTTTCTCAACCTATTTCTCAAAGTTATCATCATCCCTATAGTAATCCTTATTACACTCTGCAATTTAACCCAGTTCCGAGCGGTTATACCTCACCAATGCTTAGAACAAGTGGTTCACTAGACAACACATTTGGAATCTTTGGGGAAATGATATATGCAAGGGTGTTTGGTAACCAAGTGACAAACATGCATCCTTATGCTAATTCGTACAATCTTTCAGGGATTAGTAACCCAAGGATGAGAAGACATTTAATGCATGTTGATAAATCACTCAGCAGAATAAGTTGTTTCCTCCTATGTTGCCTAGTTTTTTGTCTCCTCTTATTCTGA 723 0.3956 MVLDNLEETVSQNEKWKSSNEVIADSDINDSSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLHFQRTSIDSEKQQNPQCPVCKSEVSQSSLVPLYGRGLIARPSKGKTHQVGIVIPQRPYGPRSLSTSSVSQPISQSYHHPYSNPYYTLQFNPVPSGYTSPMLRTSGSLDNTFGIFGEMIYARVFGNQVTNMHPYANSYNLSGISNPRMRRHLMHVDKSLSRISCFLLCCLVFCLLLF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01289 240 SUPERFAMILY RING/U-box 32 97 - -
Phco9g01289 240 ProSiteProfiles Zinc finger RING-type profile. 36 85 IPR001841 -
Phco9g01289 240 Pfam RING-type zinc-finger 36 82 IPR027370 -
Phco9g01289 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 111 IPR013083 -
Phco9g01289 240 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Phco9g01289 240 SMART ring_2 36 84 IPR001841 -
Phco9g01289 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 238 IPR045103 GO:0005783|GO:0006511|GO:0061630
Phco9g01289 240 CDD RING-HC_AtRMA-like 34 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01289 Phco-Chr9 13522270 13522992 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01289 9 13522270 13522992 Phco9g01289 9 13522270 13522992 ECH