Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2138 ATGGCAAAGACTAGGAGGGTCTGCCATCTTCTGTTAAGGTTCTTGGCCTTTGCTGCAACCCTTTCAGCAGTAATTGTCATGGCTACTAGCCATGAGAGAGCTAGCTTCTTCACGGTGTCATTGGAAGCAAAATACACCAACTCCCCTGCCTTCAAGTACTTTGTGGTTGCATACTCTGTTGTCACTGTCTATGGATTTTTGGTCCTCTTTCTTCCTTCAGAAAGCTTGCTCTGGAGACTAGTGGTGGCCTTGGATTTGGTGTTCACCATGTTACTCATCTCAAGCTTCTCTGCAGCTTTGACAATAGCTCAAGTGGGAAAGAAAGGAAACAGTTATGCAGCATGGCTACCAATATGTGATTCAGTCCCCAAATATTGTGAGCAAGTGACAGGAGCTTTAATCGCTGGTTTCGTCGCAGTGATTATATACATAATTCTTCTGTTGCATTCCATTCATACTGTCATAGACCCTCTTCTCTTGAGAAAAAATTGA 492 0.435 MAKTRRVCHLLLRFLAFAATLSAVIVMATSHERASFFTVSLEAKYTNSPAFKYFVVAYSVVTVYGFLVLFLPSESLLWRLVVALDLVFTMLLISSFSAALTIAQVGKKGNSYAAWLPICDSVPKYCEQVTGALIAGFVAVIIYIILLLHSIHTVIDPLLLRKN 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2138 163 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 2 161 - -
Ssu3g2138 163 Pfam Casparian strip membrane protein domain 4 141 IPR006702 -
Ssu3g2138 163 PANTHER CASP-LIKE PROTEIN 1C1 2 161 - -
Ssu3g2138 163 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 10 153 IPR006459 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2138 Ssu-Chr3 69938078 69939272 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2138 - - gmx:100809698 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2138 3 69938078 69939272 Ssu3g2138 3 69938078 69939272 ECH