Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1200 ATGGCCAAGACCAGGTGGATCTGCCATCTTTTGGTGAGGTTCTTGGCCTTTGCAGCCACACTTTCAGCAGTGATTGTCATGGCTACTAGCCATGAGAGAGCTAGCTTCTTGGCTATATCCTTCGAAGCAAAATACACTAACACCCCTGCATTCAAGTACTTTGTGATTGCAAACTCTGTTGTTACCGTCTATGGATTTCTTGTCTTCTTTCTTCCTGCAGAAAGCTTGCTCTGGCGACTAGTGGTCGCCATGGATTTGGTGTTCACCATGTTACTCATCTCAAGCATATCTGCAGCATTGACTATAGCTGAAGTGGGAAAGAAAGGGAACAGTTATGCAGCTTGGCTTCCAATATGCGATTCAGTGCCCAAATTTTGTGATCAAGTGACAGGAGCTTTAATAGCTGGTTTCATTGCCGTCATTGTCTACATGATTCTTCTGTTGCATTCCATTCATAGTGTCCTAGACCCTCTACTATTGAGAAAAACTTGA 492 0.439 MAKTRWICHLLVRFLAFAATLSAVIVMATSHERASFLAISFEAKYTNTPAFKYFVIANSVVTVYGFLVFFLPAESLLWRLVVAMDLVFTMLLISSISAALTIAEVGKKGNSYAAWLPICDSVPKFCDQVTGALIAGFIAVIVYMILLLHSIHSVLDPLLLRKT* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1200 163 PANTHER CASP-LIKE PROTEIN 1C1 2 161 - -
Lja3g1200 163 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 2 161 - -
Lja3g1200 163 Pfam Casparian strip membrane protein domain 5 142 IPR006702 -
Lja3g1200 163 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 10 154 IPR006459 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1200 Lja-Chr3 12644276 12645836 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1200 - - gmx:100809698 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1200 3 12644276 12645836 Lja3g1200 3 12644276 12645836 ECH