Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01710 ATGACCAAGGCTAGTAGAATCTGCCATCTCTTGTTAAGGTTCTTGGCTTTTTCAGCCACCCTTTCAGCAGTAATTGTCATGGTTTCTAGCCATGAAAAAGCTACTTTCTTTACTGTTTCCTTTGAAGCAAAATACACCAACTCTCCATCCTTCAAGTACTTTGTGATTGCAAACTCTGTTGTTACTGTCTACGGATTTTTCATACTCTTTCTTCCGGCAGAAAGCTTGCTCTGGCGACTCGTGGTCGCCACGGATATGGTGTTGACCATGTTACTCATCTCAAGCATATCTGCAGCGTTGGCTATAGCTCAAGTGGCAAAGCAAGGAAACAATTATGCAGCTTGGTTACCAATATGTAATTCAGTCCCCAAATTTTGCAATCATACGACTGGAGCTTTAATTGCGAGTTTCATCGGAGTAATTATATACATGATTCTTCTGTTGCATTCCATTCATAGGGTCCTTGACCCTCTCCTCTTGAGAAAAACTTGA 492 0.4146 MTKASRICHLLLRFLAFSATLSAVIVMVSSHEKATFFTVSFEAKYTNSPSFKYFVIANSVVTVYGFFILFLPAESLLWRLVVATDMVLTMLLISSISAALAIAQVAKQGNNYAAWLPICNSVPKFCNHTTGALIASFIGVIIYMILLLHSIHRVLDPLLLRKT 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01710 163 PANTHER CASP-LIKE PROTEIN 4A4 5 153 - -
Vivi5g01710 163 Pfam Casparian strip membrane protein domain 4 141 IPR006702 -
Vivi5g01710 163 NCBIfam plant integral membrane protein TIGR01569 10 154 IPR006459 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01710 Vivi-Chr5 60213201 60214470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01710 3 134 Miscellaneous Gene Families AT3G16300 23.649 1.30e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01710 - - qsa:O6P43_028807 237.654