Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0789 . . Adu02g01975 . . Ahy12g2056 Ahy2g1781 Aip02g02290 . Amo12g2310 . . Arst2g02581 . . . Car06g02524 . . . . . . . . . . . . . . . . . . . . . . . Mepo2g00470 Mesa13g05047 . Mtr4g0443 . . . . Pste6g00744 . . . Spst4g00983 . . Tpr4g0757 Trre7g00461 Tsu06g00428 . . . . . Vra9g1239
Pvu10g0790 . . Adu02g01966 . . Ahy12g2046 . Aip02g02281 . Amo12g2303 . . Arst2g02567 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01329 . . Pste6g00762 . . . . . . . . . . . . . . .
Pvu10g0791 . . Adu02g01965 . . Ahy12g2045 Ahy2g1772 Aip02g02280 . . . . Arst2g02566 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01328 . . Pste6g00763 . . . . . . . . . . . . . Vivi5g00604 .
Pvu10g0792 . . Adu02g01964 . . Ahy12g2044 Ahy2g1770 Aip02g02279 . Amo12g2302 . . Arst2g02562 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste6g00769 . . . . . . . . . . . . . Vivi5g00605 .
Pvu10g0793 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0794 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0795 . . . . . Ahy12g2042 Ahy2g1769 Aip02g02276 . Amo12g2301 . . Arst2g02561 . . . Car06g02504 . . . . . . . . . . . . . . . . . . . . . . . Mepo2g00443 Mesa13g05050 . Mtr4g0415 . . . . Pste6g00774 . . . . . . Tpr4g0735 Trre7g00439 Tsu06g00380 . . . . Vivi5g00606 .
Pvu10g0796 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0797 . . Adu02g02184 Aed2g0924 . Ahy12g2284 Ahy2g1969 Aip02g02560 . . Amo02g2693 . . . . . . . . . . . . . . Gso3g0250 . . . . . . . . . . . . . Mal7g0848 Mepo2g00788 . . Mtr4g0748 . . . Psa7g5424 . . . . . Ssu4g2551 . Tpr4g1001 . Tsu06g00712 . . . . . .
Pvu10g0798 . . . Aed2g0923 . . . . . . . . . . . . . Cca01g02065 . . . . . . . . . Lal7g0184 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vifa4g00754 . . . .
   
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Select Species Gene Chromosome Start End Strand
Psa Psa7g5424 Chr7 467927846 467931095 -
Pvu Pvu10g0789 Chr10 23510863 23513407 +
Adu Adu02g01975 Chr02 82069539 82072136 -
Ahy Ahy12g2056 Chr12 104808476 104810896 -
Ahy Ahy2g1781 Chr2 90235165 90237710 -
Aip Aip02g02290 Chr02 95357990 95360334 -
Amo Amo12g2310 Chr12 104201928 104204434 -
Arst Arst2g02581 Chr2 81519513 81522004 -
Car Car06g02524 Chr06 29484012 29486951 -
Mepo Mepo2g00470 Chr2 5608513 5612451 -
Mesa Mesa13g05047 Chr13 80511844 80517614 +
Mtr Mtr4g0443 Chr4 5505073 5509430 -
Pste Pste6g00744 Chr6 2826717 2829234 +
Spst Spst4g00983 Chr4 41568726 41573099 -
Tpr Tpr4g0757 Chr4 7062743 7066889 -
Trre Trre7g00461 Chr7 2884326 2887162 -
Tsu Tsu06g00428 Chr06 3662376 3663145 -
Vra Vra9g1239 Chr9 19417709 19422875 -
Pvu Pvu10g0790 Chr10 23527691 23531800 -
Adu Adu02g01966 Chr02 81937066 81942228 +
Ahy Ahy12g2046 Chr12 104594493 104599646 +
Aip Aip02g02281 Chr02 95154057 95159312 +
Amo Amo12g2303 Chr12 103966470 103971844 +
Arst Arst2g02567 Chr2 81386944 81391881 +
Phco Phco1g01329 Chr1 32397293 32403635 +
Pste Pste6g00762 Chr6 2905162 2911373 -
Pvu Pvu10g0791 Chr10 23573971 23577256 -
Adu Adu02g01965 Chr02 81910671 81913104 +
Ahy Ahy12g2045 Chr12 104586710 104589094 +
Ahy Ahy2g1772 Chr2 90085661 90088072 +
Aip Aip02g02280 Chr02 95146344 95148803 +
Arst Arst2g02566 Chr2 81360548 81362886 +
Phco Phco1g01328 Chr1 32293623 32296757 +
Pste Pste6g00763 Chr6 2915902 2919620 -
Vivi Vivi5g00604 Chr5 11056853 11059630 -
Pvu Pvu10g0792 Chr10 23638132 23641517 +
Adu Adu02g01964 Chr02 81872402 81876795 -
Ahy Ahy12g2044 Chr12 104568665 104573425 -
Ahy Ahy2g1770 Chr2 90054836 90059283 -
Aip Aip02g02279 Chr02 95125769 95131420 -
Amo Amo12g2302 Chr12 103940426 103945362 -
Arst Arst2g02562 Chr2 81322286 81326402 -
Pste Pste6g00769 Chr6 2944071 2947937 +
Vivi Vivi5g00605 Chr5 11073734 11077112 +
Pvu Pvu10g0793 Chr10 23685779 23687491 +
Pvu Pvu10g0794 Chr10 23722563 23723623 -
Pvu Pvu10g0795 Chr10 23741762 23743690 +
Ahy Ahy12g2042 Chr12 104501041 104503653 -
Ahy Ahy2g1769 Chr2 90020272 90022811 -
Aip Aip02g02276 Chr02 95049495 95052541 -
Amo Amo12g2301 Chr12 103872907 103875600 -
Arst Arst2g02561 Chr2 81295366 81297962 -
Car Car06g02504 Chr06 28906984 28909327 +
Mepo Mepo2g00443 Chr2 5253789 5255989 +
Mesa Mesa13g05050 Chr13 80582640 80587691 -
Mtr Mtr4g0415 Chr4 4983747 4986182 +
Pste Pste6g00774 Chr6 2968225 2970290 +
Tpr Tpr4g0735 Chr4 6857473 6860079 +
Trre Trre7g00439 Chr7 2749932 2752546 +
Tsu Tsu06g00380 Chr06 3250177 3252697 +
Vivi Vivi5g00606 Chr5 11088852 11091255 +
Pvu Pvu10g0796 Chr10 24074974 24076348 +
Pvu Pvu10g0797 Chr10 24136419 24139075 -
Adu Adu02g02184 Chr02 86118969 86122001 -
Aed Aed2g0924 Chr2 7187600 7189651 +
Ahy Ahy12g2284 Chr12 110036172 110039010 -
Ahy Ahy2g1969 Chr2 94251673 94254859 +
Aip Aip02g02560 Chr02 100209080 100213176 -
Amo Amo02g2693 Chr02 83720535 83723506 +
Gso Gso3g0250 Chr3 3512212 3517044 -
Mal Mal7g0848 Chr7 22967014 22969106 +
Mepo Mepo2g00788 Chr2 9600652 9602104 -
Mtr Mtr4g0748 Chr4 9487090 9491667 +
Psa Psa7g5424 Chr7 467927846 467931095 -
Ssu Ssu4g2551 Chr4 64658009 64660142 +
Tpr Tpr4g1001 Chr4 9602270 9607266 +
Tsu Tsu06g00712 Chr06 6208800 6210200 +
Pvu Pvu10g0798 Chr10 24248162 24250539 -
Aed Aed2g0923 Chr2 7178411 7181449 -
Cca Cca01g02065 Chr01 47884817 47886888 +
Lal Lal7g0184 Chr7 2470017 2473408 +
Vifa Vifa4g00754 Chr4 221872331 221873017 +