Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0779 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0780 . . Adu02g01987 . . Ahy12g2065 Ahy2g1793 Aip02g02299 . Amo12g2318 . . Arst2g02594 . . . Car06g02528 . . . . . . . . . . . . . . . . . . . . . . . Mepo2g00472 Mesa13g05045 . Mtr4g0445 . Phco1g01346 . . . . . . . . . Tpr4g0759 Trre7g00464 Tsu06g00445 . . . . . .
Pvu10g0781 . . . . . . . . . . . . . . . . . . . . . . . . Gso1g0899 . . . . . . . . . . . . . . . . . . . . Phco1g01344 . . . . . . . . . . . . . . . . Vivi5g00842 .
Pvu10g0782 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0783 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0784 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01338 . . . . . . . . . . . . . . . . . .
Pvu10g0785 . . . . . . . . . . . . . . . . . . . . . . . . Gso1g0896 . . . . . . . . . . . . . . . . . . . . Phco1g01335 . . Pste6g00015 . . . . . . . . . . . . . . .
Pvu10g0786 . . . . . . . . . . . . . . . . . . . . . . Gma03g00658 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0787 . . Adu02g01977 Aed2g1110 . Ahy12g2058 Ahy2g1785 Aip02g02292 . Amo12g2313 . . . . . . Car06g02525 . . . . . . . . . . . . . . . . . . . . . . . . Mesa13g05046 . Mtr4g0444 . . . . . . . . . . . Tpr4g0758 . Tsu06g00444 . . . . . Vra9g1242
Pvu10g0788 . . Adu02g01976 Aed2g1109 . Ahy12g2057 Ahy2g1784 Aip02g02291 . Amo12g2312 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0779 Chr10 23245005 23245892 +
Pvu Pvu10g0780 Chr10 23258844 23259878 +
Adu Adu02g01987 Chr02 82372898 82377695 -
Ahy Ahy12g2065 Chr12 104970985 104971771 -
Ahy Ahy2g1793 Chr2 90560610 90561446 -
Aip Aip02g02299 Chr02 95517304 95517695 -
Amo Amo12g2318 Chr12 104375349 104381773 -
Arst Arst2g02594 Chr2 81826074 81826832 -
Car Car06g02528 Chr06 29546776 29548031 +
Mepo Mepo2g00472 Chr2 5625596 5626552 +
Mesa Mesa13g05045 Chr13 80487232 80487671 -
Mtr Mtr4g0445 Chr4 5525307 5526052 +
Phco Phco1g01346 Chr1 33921958 33922655 -
Tpr Tpr4g0759 Chr4 7074127 7074989 +
Trre Trre7g00464 Chr7 2893139 2893559 +
Tsu Tsu06g00445 Chr06 3791117 3791520 +
Pvu Pvu10g0781 Chr10 23283837 23288829 -
Gso Gso1g0899 Chr1 36758759 36763531 -
Phco Phco1g01344 Chr1 33673164 33677096 +
Vivi Vivi5g00842 Chr5 16112460 16115818 +
Pvu Pvu10g0782 Chr10 23311337 23313914 -
Pvu Pvu10g0783 Chr10 23341467 23345863 +
Pvu Pvu10g0784 Chr10 23361310 23363064 -
Phco Phco1g01338 Chr1 33188194 33189422 +
Pvu Pvu10g0785 Chr10 23393634 23396240 -
Gso Gso1g0896 Chr1 36584564 36595500 +
Phco Phco1g01335 Chr1 32954531 32976049 +
Pste Pste6g00015 Chr6 42572 49130 +
Pvu Pvu10g0786 Chr10 23403352 23403642 -
Gma Gma03g00658 Chr03 20424958 20436019 -
Pvu Pvu10g0787 Chr10 23474313 23477118 -
Adu Adu02g01977 Chr02 82140285 82145932 +
Aed Aed2g1110 Chr2 9091081 9093073 -
Ahy Ahy12g2058 Chr12 104851682 104859336 +
Ahy Ahy2g1785 Chr2 90346263 90352141 +
Aip Aip02g02292 Chr02 95401549 95408873 +
Amo Amo12g2313 Chr12 104246779 104254159 +
Car Car06g02525 Chr06 29495769 29500065 +
Mesa Mesa13g05046 Chr13 80507081 80510102 -
Mtr Mtr4g0444 Chr4 5512247 5515547 +
Tpr Tpr4g0758 Chr4 7069011 7072336 +
Tsu Tsu06g00444 Chr06 3785919 3791082 +
Vra Vra9g1242 Chr9 19481408 19484382 +
Pvu Pvu10g0788 Chr10 23491705 23494680 -
Adu Adu02g01976 Chr02 82096697 82107989 +
Aed Aed2g1109 Chr2 9081530 9084724 -
Ahy Ahy12g2057 Chr12 104828807 104833241 +
Ahy Ahy2g1784 Chr2 90310335 90317463 +
Aip Aip02g02291 Chr02 95378767 95394271 +
Amo Amo12g2312 Chr12 104221819 104228194 +
Vra Vra9g1242 Chr9 19481408 19484382 +