Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01329 ATGACGATCGCCACTTCTACGAATCCAGACGGTTCTGTAAAAAATGCAATGCCTTCTTATTTTTATTTACCGCCACTAGATGTTTCTGCAGCATTTCCACAAGCAACACCAGCATCTACGTTTCCTCCTTCTGCTTCAGATTATTTTCAATTGGACGACTTGTTGACAGCGGAGGAGCATGCCATTAGGAGGAAAGTAAGAGAGTGTATGGAAAAAGAAATTGCTCCAATAATGACTGAGTACTGGGAGAAGGCAAAGTTCCCATTTCATGTTATTCCAAAGCTTGGTGCCTTGCACATTGCAGGTGGCACAATCAAGGATTATGGTTGTCCTGGTCTTTCTGTTGTTGGAAGTGCAATAGCTGCAGCAGAAGTTGCAAGAGTTGATGCCAGCTGTTCAACTTTTATTTTGGTCCATTCATCCTTGGCAATGCTTACTATTGCGTTGTGTGGATCAGAAGCTCAGAAGCAAAAGTATCTGCCTTCTTTGGCACAGCTTCATACTATAGCATGCTGGGCTTTGACGGAACCTGACTATGGAAGTGATGCCAGTGCTTTGAAGACCACTGCCACAAAGGTGGAGGGCGGATGGATCCTTGAGGGCCAAAAGCGGTGGATAGGAAACAGTACATTTGCTGATGTATTGGTTGTATTTGCTAGGAATGCAACAACGAATCAGATAAATGGATTTATTATTAAAAAGGACGCACCTGGTTTAACGGTAACAAAAATAGAGAATAAAATTGGACTTAGGATTGTACAAAATGGTGACATTGTTATGAGAAAAGTTTTTGTCCTTGACGAGGACAGAATTGCAGGAGTAAACTCTTTTCAGGACACAAACAAGGTGCTTGCTGTTTCACGTATAATGGTTGCTTGGCAACCCATTGGTATATCGATGGGCATCTATGATATGTGTCATAGGTATCTATCAGAGAGGAAACAATTTGGATCTCCATTAGCAGCTTTCCAAATCAGCCAACAGAAACTTGTCCAAATGCTCGGTAATATTCAAGCTATGATTCTTGTTGGTTGGCGCCTCTGCAAATTGTATGAGAGTGGTAAAATGACTCCCGGTCATGCTAGCTTGGGAAAGTCATGGATCACCTTGAGAGCAAGAGAAACAGCTGCTCTGGGCCGAGAATTGCTAGGTGGAAATGGAATTTTGGCTGATTTTCTTGTGGCAAAGGCATTCTGTGATTTAGAACCCATCTATACCTACGAAGGCACGTATGACATTAACACCTTGATTACAGGTAGAGAAGTTACTGGGTTTGCCAGCTTTAAACCAGTTTCTAAAAGAAGTCGATTGTAG 1314 0.4224 MTIATSTNPDGSVKNAMPSYFYLPPLDVSAAFPQATPASTFPPSASDYFQLDDLLTAEEHAIRRKVRECMEKEIAPIMTEYWEKAKFPFHVIPKLGALHIAGGTIKDYGCPGLSVVGSAIAAAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLHTIACWALTEPDYGSDASALKTTATKVEGGWILEGQKRWIGNSTFADVLVVFARNATTNQINGFIIKKDAPGLTVTKIENKIGLRIVQNGDIVMRKVFVLDEDRIAGVNSFQDTNKVLAVSRIMVAWQPIGISMGIYDMCHRYLSERKQFGSPLAAFQISQQKLVQMLGNIQAMILVGWRLCKLYESGKMTPGHASLGKSWITLRARETAALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLITGREVTGFASFKPVSKRSRL 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01329 437 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 280 425 IPR036250 GO:0016627
Phco1g01329 437 Gene3D - 36 169 IPR037069 GO:0016627|GO:0050660
Phco1g01329 437 FunFam Acyl-coenzyme A oxidase 4, peroxisomal 277 436 - -
Phco1g01329 437 FunFam Acyl-coenzyme A oxidase 4, peroxisomal 36 169 - -
Phco1g01329 437 Pfam Acyl-CoA dehydrogenase, middle domain 171 263 IPR006091 GO:0016627
Phco1g01329 437 Pfam Acyl-CoA dehydrogenase, N-terminal domain 56 165 IPR013786 GO:0016627|GO:0050660
Phco1g01329 437 Gene3D - 277 436 - -
Phco1g01329 437 ProSitePatterns Acyl-CoA dehydrogenases signature 2. 381 400 IPR006089 GO:0003995
Phco1g01329 437 Gene3D - 170 276 IPR046373 GO:0016627
Phco1g01329 437 FunFam Acyl-coenzyme A oxidase 4 peroxisomal 170 276 - -
Phco1g01329 437 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 46 275 IPR009100 GO:0016627
Phco1g01329 437 PANTHER ACYL-COENZYME A OXIDASE 11 435 IPR045008 GO:0003995|GO:0006635
Phco1g01329 437 Pfam Acyl-CoA dehydrogenase, C-terminal domain 281 422 IPR009075 GO:0016627
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01329 Phco-Chr1 32397293 32403635 Dispersed