Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2303 ATGGCAATCCACTCTTCTTCCAATCAAGATGATTCTAGCAAAAGGGCGATGCCGTCCTATTTCAATTTACCGCCACTGGATGTTTCTAATGCATTTCCACAAGCAACACCAGCGTCTGTATTTCCTCCTTGTGCTTCAGATTATTTTCAATTCGATGACTTATTGACACCAGAGGAGCAGGCAGTTAGGAAGAAAGTAAGAGAATGTATGGAAAAAGAAATTGCACCAGTAATGACTGAGTACTGGGAAAAGGCCAAGTTCCCATTTCAGTGTATACCAAAACTTGCTGCATTGCGTCTCGCTGGTGGAACAATCAAGGGCTATGGTTGTCCTGGCCTTTCTATTCTTGGTAGTGCTGTAGGTACTGCTGAAGTTGCAAGAGTTGATGCAAGCTGTTCAACTTTTATTTTGGTTCATTCATCCTTAGCAATGCTTACTATTGCATTGTGTGGATCAGAAGCCCAGAAGCAAAAGTATCTACCTTCTTTGGCACAGTTTCAAACTATAGGATGCTGGGGTTTGACTGAGCCCGACTATGGAAGTGATGCCAGTGCTTTGAAGACTACAGCAACAAAGGTTGAAGGAGGTTGGATCCTAGATGGCCAAAAGCGGTGGATAGGAAACAGTACGTTTGCTGATATATTGGTTATCTTTGCTAGGAATACCTCTACAAATCAGATAAATGGATATATTGTAAAAAAGGATGCACCTGGTTTAACCGTCACCAAAATAGAGAATAAAATTGGACTCAGGATTGTTCAAAATGGAGACATTGTTATGAAGAAAGTTTTTATCCCTGATGAGGACAGATTAACAGGGGTCAACTCTTTTCAAGACACAAACAAGGTACTTGCTGTCTCACGTGTAATGGTTGCTTGGCAACCAATTGGCATATCCATGGGAATCTATGATATATGTCATAGGTATTTAAAGGAGAGGAAACAGTTTGGAGCACCATTAGCAGCTTTCCAGATCAACCAACAGAAACTTGTTCAGATGCTTAGCAATGTTCAAGCCATGTTTCTCGTTGGTTGGCGCCTTTGCAAATTGTACGAGAGTGGTAAAATGACTCCTGGACATGCAAGCTTGGCCAAGTCATGGATCACCTTGAGAGCAAGAGAAACAGCTGCTCTGGGACGAGAATTACTTGGTGGCAATGGAATATTGGCCGATTTTCTTGTCGCCAAGGCATTCTGCGATATAGAACCTATTTATACGTATGAAGGTACATATGACATCAACACTTTGGTTACTGGCAGGGAAGTTACTGGTTTTGCTAGCTTTAAGCCTGTTATTGCCCAAAAGAGAAGCCGATTGTGA 1320 0.4189 MAIHSSSNQDDSSKRAMPSYFNLPPLDVSNAFPQATPASVFPPCASDYFQFDDLLTPEEQAVRKKVRECMEKEIAPVMTEYWEKAKFPFQCIPKLAALRLAGGTIKGYGCPGLSILGSAVGTAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQFQTIGCWGLTEPDYGSDASALKTTATKVEGGWILDGQKRWIGNSTFADILVIFARNTSTNQINGYIVKKDAPGLTVTKIENKIGLRIVQNGDIVMKKVFIPDEDRLTGVNSFQDTNKVLAVSRVMVAWQPIGISMGIYDICHRYLKERKQFGAPLAAFQINQQKLVQMLSNVQAMFLVGWRLCKLYESGKMTPGHASLAKSWITLRARETAALGRELLGGNGILADFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGFASFKPVIAQKRSRL* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2303 439 Gene3D - 36 169 IPR037069 GO:0016627|GO:0050660
Amo12g2303 439 Pfam Acyl-CoA dehydrogenase, middle domain 171 263 IPR006091 GO:0016627
Amo12g2303 439 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 46 275 IPR009100 GO:0016627
Amo12g2303 439 PANTHER ACYL-COENZYME A OXIDASE 2 439 IPR045008 GO:0003995|GO:0006635
Amo12g2303 439 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 280 425 IPR036250 GO:0016627
Amo12g2303 439 ProSitePatterns Acyl-CoA dehydrogenases signature 2. 381 400 IPR006089 GO:0003995
Amo12g2303 439 Gene3D - 170 276 IPR046373 GO:0016627
Amo12g2303 439 PANTHER ACYL-COENZYME A OXIDASE 4, PEROXISOMAL 2 439 - -
Amo12g2303 439 Gene3D - 277 436 - -
Amo12g2303 439 Pfam Acyl-CoA dehydrogenase, N-terminal domain 56 165 IPR013786 GO:0016627|GO:0050660
Amo12g2303 439 Pfam Acyl-CoA dehydrogenase, C-terminal domain 281 421 IPR009075 GO:0016627
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2303 Amo-Chr12 103966470 103971844 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2303 1 439 Acyl Lipid Metabolism Gene Families AT3G51840 79.727 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2303 K00232 - gmx:100125585 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2303 12 103966470 103971844 Amo12g2303 12 103966470 103971844 ECH