Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2302 ATGGCAACATGGGTCTTATCAGAATGTGGGTTAAGGCCTCTTCCCCCAATGTTCCCTAGACCAAGAACTGGATCCATTTCATGCACCAAATCTTCTTCTATAAACTCCACATTCTTATCCTCAGATCTGAAGAGCTTCCAACAACAAACAAGGTTCCAATGTTGTAGTTTTAAGGAGAGAAGAAGAAGCTGGGAGATTAAGGTTAGTGTACCTTTAAGGGTTGGCACCATTGAGGAAGAAGAAGAAGGAATCATCAATGGTGTTGTTGAAAAAAGAGAAGTTTGTGAATTTGACCCTGGTGCACCACCACCATTCAAATTGAGTGACATAAGAGCAGCAATACCTAAGCACTGTTGGGTTAAGGATCCATGGAGGTCAATGAGTTATGTTGTGAGAGATGTTGTTGTTGTTCTTGGTTTGGCGGCTGCTGCTGCACACCTCAACAATTGGATTGTTTGGCCTCTCTATTGGGCTGCTCAAGGAACCATGTTTTGGGCACTTTTTGTTCTTGGTCATGATTGTGGTCATGGAAGCTTCTCAAACAATCCCAAACTGAACAGTGTTGTTGGACATTTGTTGCATTCTTCAATTCTAGTACCATATCATGGATGGAGAATTAGTCATAGAACTCATCATCAAAACCATGGCCATGTTGAAAATGATGAATCTTGGCACCCGCTGCCTGAAAAAATCTTCAAGAGCTTGGACAATGTAACACGTACCTTAAGATTCACAATACCTTTTCCAATGCTTGCATATCCTATATACCTTTGGAGCAGAAGTCCTGGGAAGACAGGTTCTCACTTTCATCCAGATAGTGACTTGTTTGTCTCAAATGAGAGAAAAGATGTTATCACTTCAACAATTTGTTGGGCAGCCATGGCTTCTTTGCTAGTTGGGTTAGGGTTTGTGATGGGTCCAATCCAATTGCTTAAGCTTTATGGCATTCCTTACGTGCTTTTTGTTATGTGGTTGGACTTTGTTACTTATTTGCATCACCATGGCCATGAAGACAAATTACCATGGTACCGTGGAGAGGAATGGAGCTACCTTAGGGGTGGGCTTACAACTCTTGATCGTGACTATGGTTGGATTAATAATATTCACCATGATATTGGAACTCATGTCATACATCATCTCTTTCCTCAAATTCCCCATTATCACTTAATAGAAGCAACTGAAGCAGCAAAGCCAGTTCTTGGAAAGTATTACCGAGAGCCAAAGAAATCTCTACCTCTTCCATTTCACCTTATTGGAGATTTGATGAGAAGCATGAAGAAAGATCATTATGTTAGTGACACTGGTGATGTTGTTTATTACCAAACAGACCCTACACTTGGTGGCTCTTCTACATCAATTTAA 1362 0.409 MATWVLSECGLRPLPPMFPRPRTGSISCTKSSSINSTFLSSDLKSFQQQTRFQCCSFKERRRSWEIKVSVPLRVGTIEEEEEGIINGVVEKREVCEFDPGAPPPFKLSDIRAAIPKHCWVKDPWRSMSYVVRDVVVVLGLAAAAAHLNNWIVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLPEKIFKSLDNVTRTLRFTIPFPMLAYPIYLWSRSPGKTGSHFHPDSDLFVSNERKDVITSTICWAAMASLLVGLGFVMGPIQLLKLYGIPYVLFVMWLDFVTYLHHHGHEDKLPWYRGEEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGKYYREPKKSLPLPFHLIGDLMRSMKKDHYVSDTGDVVYYQTDPTLGGSSTSI* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2302 453 Pfam Fatty acid desaturase 151 404 IPR005804 GO:0006629
Amo12g2302 453 PANTHER OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTIC 48 451 - -
Amo12g2302 453 PANTHER TEMPERATURE-SENSITIVE SN-2 ACYL-LIPID OMEGA-3 DESATURASE (FERREDOXIN), CHLOROPLASTIC 48 451 - -
Amo12g2302 453 CDD Delta12-FADS-like 121 389 - -
Amo12g2302 453 Pfam Domain of unknown function (DUF3474) 1 142 IPR021863 GO:0016717
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2302 Amo-Chr12 103940426 103945362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2302 1 449 Lipid Metabolism Gene Families AT3G11170 70.824 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2302 K10257 - gmx:100217335 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2302 12 103940426 103945362 Amo12g2302 12 103940426 103945362 ECH