Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00754 ATGCTCTTCTACTCATTAGGAGTGGATGCAACTATTTTCACTCTGCAAAATAAATGTAGGAACACAATGTGGCCAGGGATTCTAACAGCACCAGGAAAACCTCAACTCATTCACGGAGGAGTTAAGCTAAAACCAGGCCAAGCTATAAACGTTACTGCACCGAGAGGTTGGTCCGGCCGTTTTTGGGGCCGGCGTGGATGCACATTCAACAGCTTTGGTATCGGAAAATGCATCACGGGAGACTGCGGAGGCAGACTTAGATGTGCTGGAGCCGGAGGCGAACCACCGGCTTCACTGGCAGAGTTTACACTCAACAGTCCAGTCGGAGATTTTTACGATATTAGCCTTGTTGATGGTTACAACATGCCAATCTCAATCTTTCCCTTAGGAGGATCTGGAATGTGTAAAGCAGTTAAATGTATTTCAGATTTGAACAGAAACTGTCCTGCTGGATTGGAGTTGAGAAACATTAAAGGCCGCGTTGTTGGTTGTAAGAGCGCTTGTATGGCTTTTCACAAGCCGGAATTTTGTTGTAACGGTGTCTTCAATAGTCCGAGAATGTGCGGGCCAAGTAGCTACTCAAAGGTGTTTAAAGCTTCGTGTCCTATGGCTTATAGTTATGCATATGATGATGCTACCAGCACTTTTACTTGCTATGGAGCAGATTACATAATTAGGTTTTGTTAG 687 0.4483 MLFYSLGVDATIFTLQNKCRNTMWPGILTAPGKPQLIHGGVKLKPGQAINVTAPRGWSGRFWGRRGCTFNSFGIGKCITGDCGGRLRCAGAGGEPPASLAEFTLNSPVGDFYDISLVDGYNMPISIFPLGGSGMCKAVKCISDLNRNCPAGLELRNIKGRVVGCKSACMAFHKPEFCCNGVFNSPRMCGPSSYSKVFKASCPMAYSYAYDDATSTFTCYGADYIIRFC 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00754 228 PANTHER OS03G0233200 PROTEIN 8 228 IPR001938 -
Vifa4g00754 228 ProSiteProfiles Thaumatin family profile. 10 228 IPR001938 -
Vifa4g00754 228 ProSitePatterns Thaumatin family signature. 73 88 IPR017949 -
Vifa4g00754 228 Pfam Thaumatin family 17 228 IPR001938 -
Vifa4g00754 228 CDD TLP-PA 12 228 - -
Vifa4g00754 228 PRINTS Pathogenesis-related protein signature 73 102 IPR001938 -
Vifa4g00754 228 PRINTS Pathogenesis-related protein signature 110 126 IPR001938 -
Vifa4g00754 228 PRINTS Pathogenesis-related protein signature 219 228 IPR001938 -
Vifa4g00754 228 PRINTS Pathogenesis-related protein signature 12 24 IPR001938 -
Vifa4g00754 228 PRINTS Pathogenesis-related protein signature 60 71 IPR001938 -
Vifa4g00754 228 PIRSF PR5 1 228 IPR001938 -
Vifa4g00754 228 Gene3D Thaumatin 11 228 IPR037176 -
Vifa4g00754 228 SMART tha2 13 228 IPR001938 -
Vifa4g00754 228 FunFam Thaumatin-like protein 1a 11 228 - -
Vifa4g00754 228 SUPERFAMILY Osmotin, thaumatin-like protein 12 228 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00754 Vifa-Chr4 221872331 221873017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00754 3 228 Receptor kinase-like Gene Family AT5G38280 43.777 1.99e-61 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00754 - - mtr:25501031 377.096