Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0790 ATGGCCCTTAACTATTCTACGGAAGGCTTAAATAGCATTCTCAGGAGCCTCAGGGAGGTCGGGGTATTCAATCCCATGATACTCAAGCAGCAAGAAACAGCTTCAGATTATTTTCAATTGGACGACTTGTTGACAGCGGAGGAGCATGCCATTAGGAGGAAAGTAAGAGAGTGTATGGAAAAAGAAATTGCTCCAATAATGACTGAGTACTGGGAGAAGGCAAAGTTCCCATTTCATGTTATTCCAAAGCTTGGTGCCTTGCACATTGCAGGTGGCACAATCAAGGATTATGGTTGTCCTGGTCTTTCTCTTATTGGAAGTGCAATAGCTATAGCAGAAGTTGCAAGAGTTGATGCCAGCTGTTCAACTTTTATTTTGGTCCATTCATCCTTGGCAATGCTTACTATTGCGTTGTGTGGATCAGAAGCTCAGAAGCAAAAGTATCTGCCTTCTTTGGCACAGCTTCATACTATAGCATGCTGGGCTTTGACGGAACCTGACTATGGAAGTGATGCCAGTGCTTTGAAGACTACTGCCATAAAGGTGGAGGGCGGATGGATCCTCGAGGGCCAAAAGCGGTGGATAGGAAACAGTACATTTGCTGATGTATTGGTGGTATTTGCTAGGAATGCAACAACGAATCAGATAAATGGATTTATTATTAAAAAGGACGCACCTGGTTTAACAGTAACAAAAATAGAGAATAAAATTGGACTTAGGATTGTACAAAATGGTGACATTGTTATGCGAAAAGTTTTTGTCCCTGACGAGGACAGAATTGCAGGAGTAAACTCTTTTCAGGACACAAACAAGGTGCTTGCTGTTTCACGTCTAATGGTTGCTTGGCAACCCATTGGTATATCGATGGGCATCTATGATATGTGTCATAGGTATCTATCAGAGAGGAAACAATTTGGATCTCCATTAGCAGCTTTCCAAATCAGCCAACAGAAACTTGTCCAAATGCTCGGTAATATTCAAGCTATGATTCTTGTTGGTTGGCGCCTCTGCAAATTGTATGAGAGTGGTAAAATGACTCCAGGTCATGCTAGCTTGGGAAAGTCATGGATCACCTTGAGAGCAAGAGAAACAGCTGCTCTGGGCCGAGAATTGCTAGGTGGAAATGGAATTTTGGCTGATTTTCTTGTGGCAAAGGCATTCTGTGATTTAGAACCCATCTATACCTACGAAGGCACGTATGACATTAACACCTTGATTACAGGTAGAGAAGTTACTGGGTTTGCCAGCTTTAAACCAGTTGCTAAAAGAAGTCGATTGTAG 1281 0.4247 MALNYSTEGLNSILRSLREVGVFNPMILKQQETASDYFQLDDLLTAEEHAIRRKVRECMEKEIAPIMTEYWEKAKFPFHVIPKLGALHIAGGTIKDYGCPGLSLIGSAIAIAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLHTIACWALTEPDYGSDASALKTTAIKVEGGWILEGQKRWIGNSTFADVLVVFARNATTNQINGFIIKKDAPGLTVTKIENKIGLRIVQNGDIVMRKVFVPDEDRIAGVNSFQDTNKVLAVSRLMVAWQPIGISMGIYDMCHRYLSERKQFGSPLAAFQISQQKLVQMLGNIQAMILVGWRLCKLYESGKMTPGHASLGKSWITLRARETAALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLITGREVTGFASFKPVAKRSRL* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0790 426 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 35 264 IPR009100 GO:0016627
Pvu10g0790 426 ProSitePatterns Acyl-CoA dehydrogenases signature 2. 370 389 IPR006089 GO:0003995
Pvu10g0790 426 Gene3D - 159 265 IPR046373 GO:0016627
Pvu10g0790 426 PANTHER ACYL-COENZYME A OXIDASE 4, PEROXISOMAL 32 424 - -
Pvu10g0790 426 Pfam Acyl-CoA dehydrogenase, N-terminal domain 45 154 IPR013786 GO:0016627|GO:0050660
Pvu10g0790 426 Pfam Acyl-CoA dehydrogenase, C-terminal domain 270 411 IPR009075 GO:0016627
Pvu10g0790 426 Pfam Acyl-CoA dehydrogenase, middle domain 160 252 IPR006091 GO:0016627
Pvu10g0790 426 Gene3D - 266 425 - -
Pvu10g0790 426 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 269 414 IPR036250 GO:0016627
Pvu10g0790 426 Gene3D - 13 158 IPR037069 GO:0016627|GO:0050660
Pvu10g0790 426 PANTHER ACYL-COENZYME A OXIDASE 32 424 IPR045008 GO:0003995|GO:0006635
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0790 Pvu-Chr10 23527691 23531800 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0790 35 426 Acyl Lipid Metabolism Gene Families AT3G51840 82.398 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0790 K00232 - gmx:100125585 754.207