Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01371 ATGTCACTGCATGACCTGCAAGAAGTTCGCATGTCAGAGTGCAATCTCTCAGGACCCCTGGATCCTTCCCTGGCAACACTTGAGAATCTATCAGTCCTTGTTCTTAATGGGAACAATTTCTCATCCCGGGTGCCAGAAGCATTTTCCCATTTGAAATCTCTGAGCATCCTAAGTCTTTTTTATTGCCAGTTGACCGGAACATTTCCACAGAAGATCTTCAACATTGGAACATTGTCAGTTGTTGACGTATCCTTCAATAAAAATCTTCAAGGTTTCTTTCCAGACTTCCCACCAGGATCTCTTCAGACCTTAAGAGTAGGTAACACAAGCTTCTCTGGAGCACTTCCAAACTCTATTGGTAACATGAGGAACTTAACTGAATTGGATTTTTCTTATTGTCGATTTAATGGAACGCTTCCCAATTCACTGTCAAACCTCACAGAACTCAGTTACCTGGACTTGTCATATAACAACTTCACAGGTCCATTGCCATCATTTGATATGGCCAAAAAACTTACCTACTTAGACCTTTCTAATAATGGTTTGAGTGGTGCAGTTCCATCATCTTCTCACTTTGAAGGACAGAAAAATCTTGTTAGCATTGACCTGGGTTATAACTCGATTACTGGGAGCATTCCTTCATCCCTTTTTACACTCCCACAGCTGCAAAAAATTATGCTTTCCCATAATCAGTTTGGTCGACTAGTTGAATTCACAAATGCGTCTTCTTCTCAATTAAACGTCCTCGATTTAAGTAGCAATAATCTATCAGGGTCTTTTCCAACATCTATATACCAACTCAGTAGACTATCTATCCTCATACTTTCTTCAAACAAGTTAAATGGGACAATGCATCTAAATAAGCTTTCGGGGATCAGAAATTTAACTACACTAGATCTTTCATACAACACCTTATCAGTCGATGTGAATGTTACAAATGCTGACCCGTCATACTTTCCCAGCATTAACAATCTAAGGTTGGCATCCTGCAACTTGAAAACTTTCCCTGGTTTCTTGAGAAATCACTCCAGAATAGCCTCTCTAGATCTTTCAGATAACCATATCCAAGGAAAAGTGCCCAACTGGATTTGGAAACTACAGAATCTTGAAAGGCTTAATATTTCTCATAATTTGTTGACTCGTTTGGAAGGACCTTTGCAGAATTTTTCTTCCAGGTTGTTTGTCCTTGATCTTCATCATAATAAACTTCAGGGGCCAATACCTGGTTTTCCTGAAAATACATTCTATTTGGACTTCTCAAGCAACAAATTTAACTCTGTTATCCCACAAGACATAGGTAATTACCTGGCTTTCACATTTTTTCTCTCTCTCTCAGACAATACTTTGAATGGCAGTATCCCTGATTCCCTCTGCAATGCTTCATATCTTCAAGTGCTTGATCTTTCCAATAATAACATTTCTGGAACAATTCCCGCATGTTTGATGGCAATGAATGAGAACCTTGGGGTATTAAATCTGAGAAAGAACAATCTCATGGGCCCTGTCCCAGATATGTTTTCAGCTGCTTGTTCTCTAAGGACTCTGAATCTCCATAACAACAAATTAGATGGAAAGATTCCAAAATCTCTTTCAAATTGTACTTCATTAGAAGTGTTGGACCTTGGAAACAACAAGATTATGGATGTGTTTCCGTGCTTGTTGAAGAACATATCCACACTCCGGGTCTTAGTCTTACGAAAAAATAATTTGTATGGTCACATTGGATGTCCAAAGACCAATGGCACGTGGCATATGCTTCAAATAGTGGATCTGGCCATTAACAATTTCACTGGCAAGCTACCTGGAAACTGCTTCACAAGGTGGGAGGCAATGATGTCTGATGAAAACCAAGGTGAATCCAAGGTAAAACATATCCAATATCAGTTTCTTCAATATGGTAGCCCAATATATTATCATGATTCAGTGACAGTTACAATAAAAGGTCAACGGATGGATCTGATTAACATTCTTACTCTCTTCACTTCGATCGACTTCTCATCCAACAATTTTGAAGGGGAAATACCAAAAGAGCTATTTGACTTTAAGGCACTCTATACACTTAACTTGTCAAATAATGCTTTTTCTGGCAAAATTCCACAATCAATTAGAAATCTGAAAGATCTTGAGTGCTTAGACTTATCAAACAACTCACTGGAAGGAAACATTCCTACAGAACTTGCAACTTTATCCTTCCTATCAGTCCTGAACCTCTCCTTTAATCATCTATTTGGGAAAATCCCCACAGGCACCCAAATTCAATCATTTCCAGAAACTTCCTTTATTGGTAACAAAGGATTGTGTGGGCCTCCTTTGACTACAAACTGCAGTGCCAATACCAGTCCTGAAACTACAGAATCAGCCAAGGACTTTGATTGGCAGTTCATAGTCACTGGAGTTGGTTTTGGGGTTGGAGCTGGAGTATTTCTTCCTACATTGATGATATGGGAGAGAGGAAGGAAATGGAGCAATGATACCATTGATAATTTTCTTTTGCGAGTTTTTTCACTGTTCGGGTTAGCTTATATCCCTATTGAGGATGACCAAGGGGACGATGATGCAGAAGAGATGGACGGTGATTCTAGTGAAGAAGAAGATGTTTGGAACTATCCAAGCTTCAGAGGAAGGTATTGTGTTTTCTGTTCCAAACTTGACACATCTATGAAGAGGGTCATTCATGACCCCAGTTGCACATGTTACCCCTCATCATCAGCTTCAAATTCTACTCATTCATCAAAATCATATTCCCCTTAA 2751 0.3919 MSLHDLQEVRMSECNLSGPLDPSLATLENLSVLVLNGNNFSSRVPEAFSHLKSLSILSLFYCQLTGTFPQKIFNIGTLSVVDVSFNKNLQGFFPDFPPGSLQTLRVGNTSFSGALPNSIGNMRNLTELDFSYCRFNGTLPNSLSNLTELSYLDLSYNNFTGPLPSFDMAKKLTYLDLSNNGLSGAVPSSSHFEGQKNLVSIDLGYNSITGSIPSSLFTLPQLQKIMLSHNQFGRLVEFTNASSSQLNVLDLSSNNLSGSFPTSIYQLSRLSILILSSNKLNGTMHLNKLSGIRNLTTLDLSYNTLSVDVNVTNADPSYFPSINNLRLASCNLKTFPGFLRNHSRIASLDLSDNHIQGKVPNWIWKLQNLERLNISHNLLTRLEGPLQNFSSRLFVLDLHHNKLQGPIPGFPENTFYLDFSSNKFNSVIPQDIGNYLAFTFFLSLSDNTLNGSIPDSLCNASYLQVLDLSNNNISGTIPACLMAMNENLGVLNLRKNNLMGPVPDMFSAACSLRTLNLHNNKLDGKIPKSLSNCTSLEVLDLGNNKIMDVFPCLLKNISTLRVLVLRKNNLYGHIGCPKTNGTWHMLQIVDLAINNFTGKLPGNCFTRWEAMMSDENQGESKVKHIQYQFLQYGSPIYYHDSVTVTIKGQRMDLINILTLFTSIDFSSNNFEGEIPKELFDFKALYTLNLSNNAFSGKIPQSIRNLKDLECLDLSNNSLEGNIPTELATLSFLSVLNLSFNHLFGKIPTGTQIQSFPETSFIGNKGLCGPPLTTNCSANTSPETTESAKDFDWQFIVTGVGFGVGAGVFLPTLMIWERGRKWSNDTIDNFLLRVFSLFGLAYIPIEDDQGDDDAEEMDGDSSEEEDVWNYPSFRGRYCVFCSKLDTSMKRVIHDPSCTCYPSSSASNSTHSSKSYSP 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01371 916 PRINTS Leucine-rich repeat signature 705 718 - -
Phco1g01371 916 PRINTS Leucine-rich repeat signature 172 185 - -
Phco1g01371 916 SUPERFAMILY L domain-like 289 437 - -
Phco1g01371 916 SUPERFAMILY L domain-like 412 772 - -
Phco1g01371 916 Pfam Leucine Rich Repeat 463 481 IPR001611 GO:0005515
Phco1g01371 916 Pfam Leucine Rich Repeat 124 146 IPR001611 GO:0005515
Phco1g01371 916 Pfam Leucine rich repeat 245 305 IPR001611 GO:0005515
Phco1g01371 916 Pfam Leucine rich repeat 683 742 IPR001611 GO:0005515
Phco1g01371 916 Pfam Leucine rich repeat 171 232 IPR001611 GO:0005515
Phco1g01371 916 Pfam Leucine rich repeat 487 546 IPR001611 GO:0005515
Phco1g01371 916 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 652 775 - -
Phco1g01371 916 SUPERFAMILY RNI-like 2 306 - -
Phco1g01371 916 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 155 776 IPR046956 -
Phco1g01371 916 SMART LRR_typ_2 122 145 IPR003591 -
Phco1g01371 916 SMART LRR_typ_2 705 733 IPR003591 -
Phco1g01371 916 SMART LRR_typ_2 534 556 IPR003591 -
Phco1g01371 916 SMART LRR_typ_2 219 242 IPR003591 -
Phco1g01371 916 SMART LRR_typ_2 27 50 IPR003591 -
Phco1g01371 916 SMART LRR_typ_2 146 168 IPR003591 -
Phco1g01371 916 SMART LRR_typ_2 510 533 IPR003591 -
Phco1g01371 916 SMART LRR_typ_2 366 388 IPR003591 -
Phco1g01371 916 Gene3D Ribonuclease Inhibitor 1 97 IPR032675 -
Phco1g01371 916 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 410 613 - -
Phco1g01371 916 Gene3D Ribonuclease Inhibitor 414 783 IPR032675 -
Phco1g01371 916 Gene3D Ribonuclease Inhibitor 312 413 IPR032675 -
Phco1g01371 916 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 100 313 - -
Phco1g01371 916 Gene3D Ribonuclease Inhibitor 193 311 IPR032675 -
Phco1g01371 916 Gene3D Ribonuclease Inhibitor 98 192 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01371 Phco-Chr1 39184748 39187498 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g01371 1 39184748 39187498 Phco3g02257 3 48974306 48977716 PCT