Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00950 ATGATATTGTCACTCTATTGGTTGTTCCTTTGTAACCACGAGTTTGTGGTTTCTGGCCATTGTCTTGATGATCAGAGGCCTTTGCTGCTCCAATTCAAGAGCAACCTCACATTCAAAGACATGGCAGATAGAAGTAGCAGCAGTCTGAATTCATGGAATTCAAGTACTGATTGTTGCATGTGGATGGGTGTGGTCTGTGATGGGGAGGGACATGTTATTGGTCTTGACCTCGTTGCAGAATCAATATCTGGTGTATTAGACAATTCAAGCAGTGTTTTCAGTCTCCAACATCTCCAGAATCTAAATTTGGCTGAAAATTTCTTCACAGGTCCAATGGCATCATTTGGGATGGCAAAAAACCTTACCAACTTAGACCTTTCTCACAATGCTTTGAGTGGTGTAATTCCATCATCTCACTTTCAAGGACTGCACAACCTTGTCTATATTGACTTGAGGGATAATTCTTTCACTGGAAGCATTCCTTCTTCCCTTTTTACACTCCCATTACTGCAAGAGATTCAGCTTTCCCACAATCAATTCAGTCACCTAGATGAATTCATAAATGTGTCATCTTCTGTGCTAAAGCTCCTGGATTTAAGTAGCAACAATCTATCAGGATCTTTTCCTACATTCATCTTCCAGTTAAATACACTTTCTATCTTCCGAATTTCTTCAAACAAGTTCAATGGGTCGGTGCAGCTGAATAAGCTTTCTATGCTTAAAAATTTAACTGAACTAGACCTATCATACAATAACTTATCAGTCAATTTGAATGTTACAGATGTCGACACATCCTTCTTTCCCAGAACTAGAACTCTAAAGTTAGCATCCTGCAACTTGAAAACTTTCCCTAGATTCTTGAGAAATATGTCCACATTGATCCATCTTGATCTTTCTGATAATCAAATTCGAGGGATGGTGCCCAAATGGATTCAGAAACTAAATTATCTCAATATTTCTCACAATTTGTTGACTGATTTCGAACCACGTTTGCACAATGATAGTTCCAACTTGTCTCTCCTGGACCTTCATTACAATAACTTTCAAGGGCCAATACCTGTTTTTCCCGCTAGATATTTGGATTACTCCTGCAACAAATTTAGCACTTTTATCCCGAGTGATATTGGAAATTACCTTTCTGAGACTTTTTTTCTCTCTCTTTCAAACAATAATTTGCATGGGAATATCCCTAACTCCCTCTGCAAAGCTTCACGTCTTGCAGTACTTGATCTTTCAATCAATGAGATTTCTGGCTCAATTCCCTTGTGTCTGATGAAGATGAGTGACACCCTTGAAGTACTAAATCTGAAGAACAACAAGCTCTCGGGACAAATTCCTGATACAGGTCCAGCTTCATGTGGTTTGTGGACCTTAAATCTTCATGGAAATCTACTAGATGGGCCAATTCCAAAGTCTCTTGCCTTCTGCTCCAAGCTAGAGGTATTGGACCTTGGATCAAATCAAATAATGGGTGGTTTCCCATGCTTTTTGAAGAAAGTCAGTATCCTGGTTTTGCGGAACAACAAATTTCAAGGTTCCCTAGCATGTTTGAAAGTGTGGCAAGTGCTTCAAGTTGTGGACATTGCTTTCAACAATTTTAGCGGAGAATTGCCAGGAAAGTATTTTACTACCTGGAAAAGAAATATAACGGATAAGAAAAATGAAGTTGGATCGAAGATCATAGAGAAAAGGATTGAATTTAGTGATTTATATTATGAAGATAGTGTGACAGTTATCAACAAAGGTTTACAAATGGAGTTGGTTAAAATTTTGAGAATCTTCACATCCATTGATTTCTCCTCCAACCATTTTGAAGGCCCGATACCAGACAAACTAATGGAATTCAAAGAACTTTATGCCCTCAACTTGTCAAACAATTGTTTGTCTGGTAAAATCCCATCATCAATTGACAACCTGATCCAGTTGGAATCTCTAGACCTTTCAAAAAACTCTTTGAGTGGAGAAATTCCTATACAGCTTGCAAATTTGTCATTTCTTTCATATTTAAACCTCTCTTTCAATCATTTGGTGGGAAAGATTCCAACAGGTACCCAACTTCAATCATTTCCGGCTTCTTCCTTCGAAGGTAATGATGGGTTATACGGTCCTCCATTAATTGAAAAACAAAAACTGCTAGAACCAGAATGTAGAAGGCTAGTGTGTATAATTAATTGGAATTTTATCACTTTCGAATTGGGACTGATTTTTGGTCTTGGAATTGTGATTGGTCCACTCTTGTTTTGGAAACAATGGAGGGTATGGTATTGCCAACTTCTGAACAGAATTCTTTGCCTCATCTTTCCGCAATTGTATCTTCAATATGTGACCGATAGAGGACAAACATATGCAATTTTAAGTTGGTGGTATTAG 2370 0.3802 MILSLYWLFLCNHEFVVSGHCLDDQRPLLLQFKSNLTFKDMADRSSSSLNSWNSSTDCCMWMGVVCDGEGHVIGLDLVAESISGVLDNSSSVFSLQHLQNLNLAENFFTGPMASFGMAKNLTNLDLSHNALSGVIPSSHFQGLHNLVYIDLRDNSFTGSIPSSLFTLPLLQEIQLSHNQFSHLDEFINVSSSVLKLLDLSSNNLSGSFPTFIFQLNTLSIFRISSNKFNGSVQLNKLSMLKNLTELDLSYNNLSVNLNVTDVDTSFFPRTRTLKLASCNLKTFPRFLRNMSTLIHLDLSDNQIRGMVPKWIQKLNYLNISHNLLTDFEPRLHNDSSNLSLLDLHYNNFQGPIPVFPARYLDYSCNKFSTFIPSDIGNYLSETFFLSLSNNNLHGNIPNSLCKASRLAVLDLSINEISGSIPLCLMKMSDTLEVLNLKNNKLSGQIPDTGPASCGLWTLNLHGNLLDGPIPKSLAFCSKLEVLDLGSNQIMGGFPCFLKKVSILVLRNNKFQGSLACLKVWQVLQVVDIAFNNFSGELPGKYFTTWKRNITDKKNEVGSKIIEKRIEFSDLYYEDSVTVINKGLQMELVKILRIFTSIDFSSNHFEGPIPDKLMEFKELYALNLSNNCLSGKIPSSIDNLIQLESLDLSKNSLSGEIPIQLANLSFLSYLNLSFNHLVGKIPTGTQLQSFPASSFEGNDGLYGPPLIEKQKLLEPECRRLVCIINWNFITFELGLIFGLGIVIGPLLFWKQWRVWYCQLLNRILCLIFPQLYLQYVTDRGQTYAILSWWY 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00950 789 Pfam Leucine Rich repeat 291 304 IPR001611 GO:0005515
Spst4g00950 789 Pfam Leucine Rich repeat 242 254 IPR001611 GO:0005515
Spst4g00950 789 Gene3D Ribonuclease Inhibitor 20 264 IPR032675 -
Spst4g00950 789 Pfam Leucine Rich Repeat 620 639 IPR001611 GO:0005515
Spst4g00950 789 Gene3D Ribonuclease Inhibitor 358 713 IPR032675 -
Spst4g00950 789 SMART LRR_typ_2 290 313 IPR003591 -
Spst4g00950 789 SMART LRR_typ_2 663 696 IPR003591 -
Spst4g00950 789 SMART LRR_typ_2 639 662 IPR003591 -
Spst4g00950 789 SMART LRR_typ_2 240 269 IPR003591 -
Spst4g00950 789 SMART LRR_typ_2 119 142 IPR003591 -
Spst4g00950 789 SMART LRR_typ_2 167 190 IPR003591 -
Spst4g00950 789 SMART LRR_sd22_2 240 261 - -
Spst4g00950 789 SMART LRR_sd22_2 290 319 - -
Spst4g00950 789 SMART LRR_sd22_2 118 145 - -
Spst4g00950 789 SMART LRR_sd22_2 639 665 - -
Spst4g00950 789 SMART LRR_sd22_2 476 495 - -
Spst4g00950 789 Pfam Leucine rich repeat 120 180 IPR001611 GO:0005515
Spst4g00950 789 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 89 183 - -
Spst4g00950 789 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 138 708 IPR046956 -
Spst4g00950 789 Gene3D Ribonuclease Inhibitor 265 355 IPR032675 -
Spst4g00950 789 SUPERFAMILY L domain-like 69 353 - -
Spst4g00950 789 ProSiteProfiles Leucine-rich repeat profile. 120 141 IPR001611 GO:0005515
Spst4g00950 789 SUPERFAMILY L domain-like 257 705 - -
Spst4g00950 789 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 265 521 - -
Spst4g00950 789 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 586 708 - -
Spst4g00950 789 PRINTS Leucine-rich repeat signature 121 134 - -
Spst4g00950 789 PRINTS Leucine-rich repeat signature 240 253 - -
Spst4g00950 789 Pfam Leucine rich repeat N-terminal domain 23 67 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00950 Spst-Chr4 39659919 39662288 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00950 21 751 Receptor kinase-like Gene Family AT3G05650 32.670 7.89e-116 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00950 - - gmx:100806632 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00950 4 39659919 39662288 Spst1g00773 1 10037802 10041209 PCT