Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0769 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu9g01004 . . .
Pvu10g0770 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0771 . . . . . . . . . . . . . . . . . . . . . . . . Gso1g0943 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0772 . . . Aed2g1130 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0773 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0774 . . . . . . . . . . . . . . . . . . . . . . Gma03g00698 . Gso1g0942 . . . . . . . . Lasa7g00654 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0775 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0776 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01357 . . . . . . . . . . . . . . . . . .
Pvu10g0777 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vivi5g00822 .
Pvu10g0778 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0769 Chr10 22809790 22817665 -
Vimu Vimu9g01004 Chr9 16874423 16891693 -
Pvu Pvu10g0770 Chr10 22831602 22834014 +
Pvu Pvu10g0771 Chr10 22856528 22859650 -
Gso Gso1g0943 Chr1 38025640 38029687 +
Pvu Pvu10g0772 Chr10 22861858 22862296 -
Aed Aed2g1130 Chr2 9324612 9330769 +
Pvu Pvu10g0773 Chr10 22898898 22899615 +
Pvu Pvu10g0774 Chr10 23045914 23047410 -
Gma Gma03g00698 Chr03 22096021 22097547 +
Gso Gso1g0942 Chr1 37975441 37977237 -
Lasa Lasa7g00654 Chr7 32422483 32423020 -
Pvu Pvu10g0775 Chr10 23079998 23083483 -
Pvu Pvu10g0776 Chr10 23099479 23100915 -
Phco Phco1g01357 Chr1 36791673 36795157 +
Pvu Pvu10g0777 Chr10 23151786 23152322 -
Vivi Vivi5g00822 Chr5 15862285 15863609 +
Pvu Pvu10g0778 Chr10 23217350 23217831 +