Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01651 ATGAGCCAGCAAGGAGAAGATCGTACTGTCTTGTGGTCCTATGGGTATGTTGGTGTTGGCAGGTTTCAATTACTTGAAGGAACAAGGATGGAAGCCAAAGCAAAGCGAGCATATAGAAGAGAGGTTCTTTCTTCCTCCGACAGCTGGTTTCGTTCGTTGCCGTCGTCGCTGATATCGTTCGCACCTTCAAGCACAATCGTTGCTGTTGGAGAGAAGAAGGATATCGTAGTAGTTGTCGTTCATCGTTGCAGTCCCAGTCGCCGTGACGACTTGGAAACAAGCACATTTGTGGAGGGACAAAATCCTGTAAAACATGCGGCACGTAAAGTGCATGCATATGCTTTGAGATTTCTAAAGGCTAATAGGTCTCATGGAATTTCCTCTCAAGCAGAGGCACCAACAACTCCTGAAAAGATTTTTGATTCAAGCACTGTTGATATGTCATGGGATGAGCATCTTAATGAAGAAAATCTTTTCTATGAAGTTCCTCCTACTGCCACGGAAACATATAGAAAAGCTATTGAATCTCATTTCCATCATTTTGAGAATAAACATTTTCAGAAAACTGGGAGTAGCATGCAAGAGGAAGTTGAAACATCTGTGTATGATACCACAGCAGAGTTTGGATCCCAAGAGAATGGATATGATGAGGAAGAAGGAGACAATAGCACTTATTACTTGCCCAGTGTCTATGAGGGCAACAAATCATCAAAATCTGCACAGAAGAAGCATAAAAATTTGAAGTCTTATGCTCCTAGGTGTGGTGATGCTGTTGCTGATTTGCCTTATGTACACTATACAACTGGATCTCAACCATCCATCATGTTTGGAAAAAGACCTGCTAGTTTAAATGTTGGGTCAATGCCAACAAAGCGCATGCGTACTGCTACTAGGCATAGAGTTGTAAGCCCTTTCACTAACATTGGGACAGTACAAGCTCAAGCTAAGGCGGATGCTTCAAGTGGTGATACTAATTCCTTTCATGATGACCAGAGTACTTTACATGCTGGACCCCTTATCCAGAAAAGTTCTGAGGTGGAGTCAGTTGCAGATTTTGAAAAACAGTTATCTTATGATTGTGCAGAAACATTTGTTAAAACAAAGAAGAAGAAGAAGGCAAAGACTCTGGGTTCAACGTATGATCAGGGGTGGCAATTGGATTATGTTGTCCTAAATGAACAGAGGGATCAGTCCAAGAAGAGAGGGGATAGTCATCACTTTGAATCTAATGGAAGTGGTGGTTTGTATGGGCAACATAATGGGAAGAAGCCAAAGATAATGAGGCCACTTGATAATCCTTTGGACAATATTGTGCCACTGACTAATTCTATTCCTTCCCCTGCTGCTTCACAAATGAGTAACATGTCAACTCCTAATAAATTTATTAAGATCATTAGTGGGAGAGACAGGGGCAGGAAAGCTAAATCTCTGAAGATTTCTGCCGGACAGTCTGGTTCTGGAAGTCCTTGGTCATTATTTGAAGATCAGGCTCTTGTGGTCCTGGTGCATGATATGGGTCCAAACTGGGAGCTCGTAAGTGATGCTATCAATAGTGCTCTCCAAATCAAGTGTGTCTTTCGCAAACCAAAAGAGTGCAAGGAGCGTCATAAAATTTTAATGGATAGAACTACTGGGGATGGTGCAGATAGTGCTGAAGATTCAGGGTCTTCACAGTCTTATCCTTCTACGTTACCTGGAATTCCTAAGCAGGGTAGTGCCAGGCAGCTATTTCAACGGTTACAGGGGCCAATGGAAGAGGATACATTGAAGTCTCATTTTGAGAAAATTATAAAGATTGGACAGAAGCAACATTACCTTAAGAATCAGGTTGATAACCAGGATTCTAAACAATTAGTGCCTGCCCATAATTCACATGTGATTGCTCTTTCCCTAACCAGTCCCAACAACCTGAATGGAAACCTTTTAACGCCACTTGATCTCTGTGAAGCTGAAGAAACAAACCCAGATGTCCCAGCCCCAGGGTACCAAGGTTCTCATCCTGGTGGTATGACATTACCACATCAAGGTTCTGTACAGTCAATGCTTCCCGCATCTGGGGTGAACTCTTCGCTACCTGGGTCTTCTGGAATGGTTCTCGGCCATAACTTGTCATCTTCATCTGGTCCAACCACAGCATCTGTCAGGGGTGGTAGATATGGAATTCCGAGGAATTCTCCTTCATCAGTGGATGAGCAACAGAGAATACAATACAATCAAATGTTATCTGGAAGAAACATTCAGCAGAGCATTTCAGTTAATGGGACACTTTCTGGAAGTGATCATGGTGTCCGCATGCTTCCCGGTGGAAATGGCATGGGCATAATGGGTGGAATTAACAAAGCCATGGCAATGTCTAGGCCAGGGTTTCAAGGAATGGCATCAGCATCGATGCTTAATGCTGGAAGCATGATTTCCTCTAGTATGGTTGGAATGCCAAGCCCCGTAAATATGCACTCTGGAGTTGGCCCTGGACCAGGCAACTCAATTTTAAGACCTCATGAGACTCTACATATGATGAGGCCTGGCCATAACCCAGAACATCAAAGACAAATGATGGTTGCAGAGCTTCAGATGCAGGTCACCCAAGGGAACAGTCAAGGTATTCCTGCTCTATGCGGGCTGAGTTCTGCCTTTAGCAATCAGACAACACCGCCTGTTCAGCCTTATCCAGTACATGCACAGCAGTCACACCAACTCTCGCAGCAGCAGTCCCATCTTAGTAATCCTCGCCCTCATCTTCAAGGTCCGAGTCATACTAATTCACAGCAGCAAGCCTATTCTGTTCGGTTAGCAAAGGAAAGGCAAATGCAGCAACGATATCTCCAGCACCAGCACCAGCTTGCTGCATCAAATGCATTGATGCCACATGTCCAGGCAAAGTCTCAACTTCCCATATCATCACCATTGCAAAACAGTTCTCAAGTTCAACCACAAAATTCTTCTCCGCAAGTCCCACATTCACCTATAACGCCACCATCCCCTTTGACTCCCATGTCATCCCAGCTCCAACAGCAGAAACTTCACCAGTCACAACCTGGGTTCAGCAGAAATTCTCCTGCTAGTGGGCTGACTAACCAAGCAGCAAAGCAACGCCCACCAAATCCGCCACAGCAGCCACTGCCGCCACAGCAGTATCAACAATCTGGTAGGCAGCATCCTAATCAACGACATAATGTACAGTCTCAACAGCAGGCAAAACTTCTGAAGGGAATGGGAAGAGGAAGTATGTTGGTCCATCCAAACCTCTCTGTGGATACTTCTCATCTAAGTGGCCTCTCTCTGCCTGTGGGAAGCCAAACTGGTGAAAAAGGGGACCAAATCTTGCACATGATGCAAGGTCAAAATATATATCCGGGATCTAGTTTCAACCCAAATCAGCCATTGAAGCCTTTGGGTCATGCTCATTCTTCAAACCATTCACAGTTGCCGCAGAGGCTTCATTCGGGGTCACCAACCACTTCTTCAAAGCAACATCGTATTCCTTCTGATACTAGTGCTCAAGCACAAGTTTCACCATCTTCATCAGGCCAGTTGTTGTCACCTCCACAGCCAGCTGTTATTGCTTCTAACCACCATCAGCTGCAGTCACAGACTCAGTCTAAGAAAATTAATCATACTCAAACAAACGTTCAGAGAATGTTGCCGCTAAACCATCCTGTTCCTTCTGAGTCATTAAATTCTGATCCAATTCAAGCTGATCAACAGCCTGCACACAGCGCTTCCCAGGTTAGCACCTGTGCTACAATGGCTCAGAGTTGTATGGATCCTGTTAGTGCTGTACCAGTTATTACCACAGTATCTTCTCAATGGAACACAGAAGAACCACCATTTGATTCCACTATTAACAATCAAACCACTCAAATGAACTCCTTGGGAAGTGCACCTGCTGGAAATTCCACTGGAAATGAGCAACCAACAACTAGTCAAGGATTGGAGCCAAGATCAGTTAGCTTGACTTGTCATGCACATAAGTCTGATACACAGTGGCAAAAACGTCAGGTACAACCTCTCCAGCAGTCATCACAACCCCTCCTATCTCAGCAGCCATATCAGACTGAGCAGCAGCAACAGCATGAGATAGAGGAATATTCTCCCAAAGATCTTGTTTTACAACCTCAACAACATATGCAGCATCTACAACCAGGGAAGAGCAGTATGTTTATCCAGCCACCTAATTCTAATGTTGAATGA 4191 0.4445 MSQQGEDRTVLWSYGYVGVGRFQLLEGTRMEAKAKRAYRREVLSSSDSWFRSLPSSLISFAPSSTIVAVGEKKDIVVVVVHRCSPSRRDDLETSTFVEGQNPVKHAARKVHAYALRFLKANRSHGISSQAEAPTTPEKIFDSSTVDMSWDEHLNEENLFYEVPPTATETYRKAIESHFHHFENKHFQKTGSSMQEEVETSVYDTTAEFGSQENGYDEEEGDNSTYYLPSVYEGNKSSKSAQKKHKNLKSYAPRCGDAVADLPYVHYTTGSQPSIMFGKRPASLNVGSMPTKRMRTATRHRVVSPFTNIGTVQAQAKADASSGDTNSFHDDQSTLHAGPLIQKSSEVESVADFEKQLSYDCAETFVKTKKKKKAKTLGSTYDQGWQLDYVVLNEQRDQSKKRGDSHHFESNGSGGLYGQHNGKKPKIMRPLDNPLDNIVPLTNSIPSPAASQMSNMSTPNKFIKIISGRDRGRKAKSLKISAGQSGSGSPWSLFEDQALVVLVHDMGPNWELVSDAINSALQIKCVFRKPKECKERHKILMDRTTGDGADSAEDSGSSQSYPSTLPGIPKQGSARQLFQRLQGPMEEDTLKSHFEKIIKIGQKQHYLKNQVDNQDSKQLVPAHNSHVIALSLTSPNNLNGNLLTPLDLCEAEETNPDVPAPGYQGSHPGGMTLPHQGSVQSMLPASGVNSSLPGSSGMVLGHNLSSSSGPTTASVRGGRYGIPRNSPSSVDEQQRIQYNQMLSGRNIQQSISVNGTLSGSDHGVRMLPGGNGMGIMGGINKAMAMSRPGFQGMASASMLNAGSMISSSMVGMPSPVNMHSGVGPGPGNSILRPHETLHMMRPGHNPEHQRQMMVAELQMQVTQGNSQGIPALCGLSSAFSNQTTPPVQPYPVHAQQSHQLSQQQSHLSNPRPHLQGPSHTNSQQQAYSVRLAKERQMQQRYLQHQHQLAASNALMPHVQAKSQLPISSPLQNSSQVQPQNSSPQVPHSPITPPSPLTPMSSQLQQQKLHQSQPGFSRNSPASGLTNQAAKQRPPNPPQQPLPPQQYQQSGRQHPNQRHNVQSQQQAKLLKGMGRGSMLVHPNLSVDTSHLSGLSLPVGSQTGEKGDQILHMMQGQNIYPGSSFNPNQPLKPLGHAHSSNHSQLPQRLHSGSPTTSSKQHRIPSDTSAQAQVSPSSSGQLLSPPQPAVIASNHHQLQSQTQSKKINHTQTNVQRMLPLNHPVPSESLNSDPIQADQQPAHSASQVSTCATMAQSCMDPVSAVPVITTVSSQWNTEEPPFDSTINNQTTQMNSLGSAPAGNSTGNEQPTTSQGLEPRSVSLTCHAHKSDTQWQKRQVQPLQQSSQPLLSQQPYQTEQQQQHEIEEYSPKDLVLQPQQHMQHLQPGKSSMFIQPPNSNVE 1396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01651 1396 MobiDBLite consensus disorder prediction 541 568 - -
Phco1g01651 1396 Pfam Myb-like DNA-binding domain 490 538 - -
Phco1g01651 1396 MobiDBLite consensus disorder prediction 1270 1396 - -
Phco1g01651 1396 Gene3D - 483 542 - -
Phco1g01651 1396 SMART sant 486 542 IPR001005 -
Phco1g01651 1396 MobiDBLite consensus disorder prediction 996 1031 - -
Phco1g01651 1396 CDD SANT 489 535 IPR001005 -
Phco1g01651 1396 PANTHER CHROMATIN MODIFICATION-RELATED PROTEIN EAF1 A-RELATED 90 1393 IPR044798 GO:0035267
Phco1g01651 1396 MobiDBLite consensus disorder prediction 703 730 - -
Phco1g01651 1396 MobiDBLite consensus disorder prediction 320 339 - -
Phco1g01651 1396 MobiDBLite consensus disorder prediction 883 925 - -
Phco1g01651 1396 MobiDBLite consensus disorder prediction 1043 1066 - -
Phco1g01651 1396 MobiDBLite consensus disorder prediction 967 1066 - -
Phco1g01651 1396 MobiDBLite consensus disorder prediction 1370 1396 - -
Phco1g01651 1396 MobiDBLite consensus disorder prediction 395 430 - -
Phco1g01651 1396 MobiDBLite consensus disorder prediction 1115 1184 - -
Phco1g01651 1396 MobiDBLite consensus disorder prediction 208 244 - -
Phco1g01651 1396 ProSiteProfiles Myb-like domain profile. 488 540 IPR001005 -
Phco1g01651 1396 MobiDBLite consensus disorder prediction 967 983 - -
Phco1g01651 1396 MobiDBLite consensus disorder prediction 320 340 - -
Phco1g01651 1396 FunFam Helicase/SANT-associated, DNA binding protein 483 545 - -
Phco1g01651 1396 MobiDBLite consensus disorder prediction 549 568 - -
Phco1g01651 1396 MobiDBLite consensus disorder prediction 1216 1239 - -
Phco1g01651 1396 MobiDBLite consensus disorder prediction 1270 1358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01651 Phco-Chr1 54415787 54432462 Dispersed/Wgd