Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0546 ATGAATGGATATAAATCAGGATCTGCTCTCCTTGTAAATGCTGAGGTTGATTCTATGGGAGGAGTAGTTGACGGCGGGGTTGGTATAGGTTTGAAGATCTCTCCGCGCAGAGTAGCAATTGAGAAGGCTCAAGCGGAGCTCAGAGAGGAATATGATGTTcgtgaagaaagaagaagagagctTGAATTTCTTGAAAAAGGTGGGAATCCTCTGGACTTTAAGTCTGGAAATGCTGCTTCAGTTAGTGTCCAGTCTACTTCACTCATTGATCAGCCTCATGAGCAGTTTGTGACCAGTGAAGCAAAAGGTAGTTTTGCATTGACTGCCTCTCCTCATGGTGACTCTGTTGACAGTAGTGCTAGACCAGGGGGTCCTTTGGCTAGTGAACCAAATACTGCTGATAATCTCCTACTTTTTGATGGTGAGAATGAGTTACCTGAAACTGAAAGGAGGTGCCTGCATTCAAATAGAAGGAATAATATTGCTCTGTCAGAACAGTCTTCCCAAATTGATGGAAGTCAAAATGCTAAGGAGACTGAAGATTCCGCTATTTTCCGGCCATATGCACGAAGGAACAGATCTAGGTCAATTCACGGTCCTCGGGGGGCTTCAAGGGAAGTGAAGGGATTAGAAACAAATAGTCAAAAGAACCCTAATTTGCCAACTGTATCTAAGCCAAAGCCTTCCAGTTTAAATGGTGATATTGGTACCAAAAATTTGACAACTAATAATACACTGAATAATGAATTGGTTGGGGTCCGAGATCATCAATCCACTAGTGGCAGTGCTAGTGTTCCCGAAGACAAATTGGATATTCCGGTGaatagaaacttaaaagaaaatcatGGAACTCTACCTTCTGAAGATAATATTAGTCAAAACCCAGCTCTCATGGCTTCTGGAGAAGCTAACGTGGCTGAATTAAGGGAGCCAGTAGCTGCTGTCAACCGTGTGCCTCCACCTCATGTACCTACTACAAAACCTGAAAATGGGCCTTATTATTGTCAGTCAAATGGCTTTGGCAATGTAGAAGTAGACAGGAAAAGTGTACCAAATGAAGGACAAAATAGCATTGCTACATTAGGcaagaagaatttcaatttagaGTCCTCATGTACACAAACTAGTTTAGGTAGAGAtgtaaataatgataatgatatgtGTACTAATACAAAGAATGTTGATGCTAATGGAAATACCATGGAACAAACATCTGAATTAGAGAATAAATTGAACTTTGCTGGCTGCGAAGTTGTGAAAGATAGGCATAagaccaaaaatgaaaatggtgcTACTGTTAGCAATGAGCATGATGCTGGTTATCAAAATCATTCTGGTAGTGGTAATATCGTCAAGGCAGAGGAAGATGTCCATATTAATAGTTCTTGTATGTCAAATATCAAGGGAGTACAACATAATGACAGTACCATATCAAAAGCTAATAAAGATACTGTCTTAGTGAATCAGTCCAATTCTGTCAAGGAAACCAGCTGCGAAAGACATCAGGTTCCTGTGGATGTGTCAATTTCAGAACCTCCTCAGGTTGCTCCAGCTGAAACGGTTACAAGCGCCACCTCTGATGATCAACCATGTCCTACGCACAATATGAAGTTAGCAGACAAGGCTCTTGAAGATTCTATTTTGGAAGAGGCTCAAATTATAGAGGCCAAGCGGAAGAGAATTGCAGAGTTATCTCTTCGCTCGTTACCCACACAGAACCACAGAAAGTCACACTGGGGTTTTGTTCTTGAGGAAATGGCATGGCTGGCAAATGATTTTGCACAGGAGCGTCTTTGGAAGATAGCTGCTGCTGCACAATTGGGCCATCAAGCAGCTTTTACTTGTCGGTCAAGAtttgaaaaactaaacaaaCAATTAGGGACAAAAATTTTGTCTCACAGGATAGCAAAGGCTGTCATGCAGTTTTGGCATTCAGCTGAGCTTCTTCTAGACAATGATCTTGATATTAACTGCATTGTTGGTTGTGTTGAATCTGGGAAAGTTGATGCAAATGAAGCTTTGAGGGACCAGAGAAGAAATTTCAATATGCTGCTGGAAACAAGGAAATTTTTGGAGGGACAAAATCCCGTAAAACATGCTGCACTAAAAGTGCATGCATATGCTTTAAGATTTTTAAAGGCTAGTAGATCTTGTGGAATTTCCTCTCAAGCAGAAACACCAACAACACCTGAAAAGATATTTGACCCAGGCTCTGTAGATATGTCATGGGACGAGCATCTTAATGAAgaaaatCTTTTCTACAAAGTTCCTCCTACTGCAATGGAAACATATAGAAAAGCTATCGAATCTCATTTCCTACAGTTCAAGAAAACTGGGAGTAGCATTCAAGAGGAAGTTGAAACATCTGTGTATGATACTGCAACAGAGTTTGGGTCTCAAGAGAATGCATATGATGAGGAAGAAGGGGAAACCAGCACTTATTACTTGCCCAGTGTCTTTGAAGgcaacaaatcatcaacatcTGCACAgaagaaacataaaaatttgCAGTCTTATGCTCCTAGGTGTGGTGATGCTGGTGCTGATTTGCCTTGTGTACACTATAAAACAGGAACTCAACCATCCATGCTGTTTGGAAAAAGACCTGCTAGTTTAAATGTTGGGTCAATACCAACAAAACGCATGCGCACCGCTACTAGGCATAGAGTTGTAAGTCCTTTCACCGTCAACATTGGGACAGTACAGGCTCAAGCTAAGGCGGATGCTTCAAGTGGTGATACCAATTCCTTCCATGATGACCAGAGTACTTTACATGTTGGACCCCTGATCCAGAAAAGCAATGAGGTGGAGTCAGTTGCAGATTTTGAAAACCAGTTATCTTATGACTATGCAGAAACATTTGTtaaaacaaagaagaagaagaaggcaAAGACTCTGGGTTCTACATATGATCAGGGATGGCAGTTGGATTCTGTTCTAAATGAACAAAGGGATCAGTCCAAGAAGAGAGGGGATAGTAATCACTTTGAATCTAATGGAAGTAGTGGTTTGTATGGGCAACATAATGTGAAGAAGCCAAAGATAATGGGGCAGTCAGTTGATAGTCCTTTGGACAATATTGTGCCAATGAGTAATTCTATTCCTTCCCCAGCTGCTTCACAGATGAGTAACATgtcaaatccaaataaatttattaaaatcattagtGGGCGAGACAGGGGCCGGAAAGCTAAAGTGCTGAAGATTCCTGCTGGACAGCCTGGTTCTGGAAGTTCTTGGTCACTATTTGAAGATCAGGCTCTTGTAGTCCTGGTGCATGATATGGGTCCAAACTGGGAGCTTGTAAGTGATGCTATCAATAGTGCTCTCCAAATCAAGTGCGTTTTTCGGAAACCAAAAGAATGCAAGGAGcgtcataaaattttaatggatagAACCACCGGGGATGGTGCAGATAGTGCTGAAGATTCAGGGTCTTCACAGTCTTATCCTTCTACATTACCTGGAATTCCTAAGCAGGGTAGTGCCAGGCAGTTGTTTCAACGTTTGCAGGGGCCAATGGAGGAGGATACACTGAAGTCtcattttgagaaaattataaagattggGCAGAAGCAACATTACTTTAAGAATCAGGTTTACAACCAGGATTTAAAACAATTAGTGCCTGTCCATGATTCACACGCGATGGCTGGTTCCCTAATCAGCCCCAACAACCTGAATGGAAGTATTTTAacGCCACTTGATCTCTGTGAAGCGGAAGAAACAAACCCAGATGTCCCAGCCCTTGGGTATCAAGGTTCTCATGCTGGTGGTCTGACATTACCAAATCAAGGTTCTGTACCATCAATGCTTCCTACATCCGGGGTGAATTCTTCACTACCTGGGTCTTCTGGTATGGTTCTTGGCCATAACTTGTCATCATCATCTGGTCCAATCGCTGCATCTGTCAGGGGTGGTAGATACGGGATGCCAAGAAATTCACCTTCATCAGTGGATGAGCACCAGAGAATACAATACAATCAAATGTTATCTGGAAGAAACATTCAACAGAGCATGTCAGTTGCAGGGACTCTTTCAGGAAGTGATCATGGTGTTCGCATGCTTCCTGGTGGAAATGGTATGGCCTTAATGGGTGGAATTAACAAAACCATGGCAATGTCTAGGCCAGGGTTTCAAGGAATGGCATCACCATCAATGATTAATTCTGGAAGCATGCTTTCCTCTAGTATGGTTGGGATGCCAAGCCCTGTAAATATGCACTTTGGAGTTGGTCCTGGACAAGGCAACTCAATGTTAAGACCTCATGAGACTCTACATATGATGAGGCCTGGCCATAACCCAGAACATCAAAGACAAATGATGGTTCCAGAGCTTCAGATGCAGGTCACCCAAGGGAACAGTCAAGGTATTCCTGCTCTGTGTGGGCTGAGTTCTGCCTTTAGCAATCAGACAACACCACCTGTTCAGCCTTACCCAGGACATGCCCAGCAACCACATCAACTGTCCCAGTCGCAGTCTCATCTCAGTAATCCTCGTCCTCATCTTCAGGGTCCAAGTCATGCCACAAATTCACAACAAGCCTATGCTGTCCGGTTGGCAAAGGAAAGGCAACTGCAGCAACGATATCTGCAGCACCAGCAGCAGCTTGCTGCATCAAATGCGTTGATGCCACATGTCCAGGCAAAGTCTCAACTTCCCATATCATCATCACCATTGCAGAACAGTTCTCAGGTTCAACCACAAAATTCTTCTCAGCAAGTACCTCTTTCACCTATAACGCCATCATCCCCTTTGACTCCCATGTCATCCCAGCTCCAACAGCAGAAATTTCACCAGACACAACCTGGGTTCGGCAGGAATCCCACTGCTAGTGGGTTGACTAGTCAAGCAGCAAAGCAACACCCACGGCATCCACCACATCAGCCGCAGCAGCAGTATCAACAGCCCAGTAGGCAACATCCTAATCAACGGCATAATGGACAGTCTCAACAGCAGGCAAAACTTCTGAAGGGAATGGGAAGAGGAAATGTGTTGGTCCATCAGAACCTCTCTGTGGATACTTCTCATCTAAGTGGACTCTCCTTGCCTGCGGGAAGCCAAACTGGTGAAAAAGGGGACCAAATCATGCACATGATGCAAGGTCAAAATTTATATCCCGGATCTGGTTTAAACCTAAATCAACCATCAAAGCCTTTGGGTCATGCTCATTCTTCAAACCATTCACAGTTGCAGCAGAAGCTACATTCTGGGTCACCAACCACTTCATCAAAGCAACTTCATATTCCTTCTGATGCTAGTGCTCAAGGACAGGTTTCACCAGTTTCATCGGGTCAGTTGTTGTCACCTCCACAGCCTGCTGTTATTGCTTCTAACCACCATCAGCTGCAGCCACAGACTCAGTCTAAGAAAATTAATCAAACTCAAACAAATGTTCAGAGAATGTTGACTCTAAACCATCATGTGCATTCTGAGTCATCAAGCAAGTCTCAGTCTGATCCAACTCAAGCTGATCAACAGCCTGCAAACAGTGCTTCCCAGGTTAGTGCATGTGCTACAATGACTCAGGGTTGTATAGATTCTATTAGTGTGGTACCAGGTGTTACTACTGTATCTTCTCAGTGGAAAACACCAGAACCACCATTTGATTCCACTGTGAACAATCAAACCACTCAAGTGAGCTCCTTGGGGAGTGCACCTGTTGGAAGTTCCACTGGAAATGAGCAACCAACAATTAGTCAAGGGTTGGGGCCAAGATCAGTTAACTTGACTTCTCATACACATAATTCTGATACACAGTGGCAGCAACGTCAGCCCCAACCTCTCCAACAGTCATCACAACCCATCCTACCTCAGCAGCCATATCAGACTGAGCAGCTGCAGCAGCAACAGGAGCAAGAACAACATTCTCCCAAAGATCTTGCTTTACAACATCAACCTCAGCAACATATGCAGCATCTACAATCAGGGCAGAGCAGTTTGTTTATCCAGCCACCTAATTCTAAAGTGGAATGA 5976 0.4203 MNGYKSGSALLVNAEVDSMGGVVDGGVGIGLKISPRRVAIEKAQAELREEYDVREERRRELEFLEKGGNPLDFKSGNAASVSVQSTSLIDQPHEQFVTSEAKGSFALTASPHGDSVDSSARPGGPLASEPNTADNLLLFDGENELPETERRCLHSNRRNNIALSEQSSQIDGSQNAKETEDSAIFRPYARRNRSRSIHGPRGASREVKGLETNSQKNPNLPTVSKPKPSSLNGDIGTKNLTTNNTLNNELVGVRDHQSTSGSASVPEDKLDIPVNRNLKENHGTLPSEDNISQNPALMASGEANVAELREPVAAVNRVPPPHVPTTKPENGPYYCQSNGFGNVEVDRKSVPNEGQNSIATLGKKNFNLESSCTQTSLGRDVNNDNDMCTNTKNVDANGNTMEQTSELENKLNFAGCEVVKDRHKTKNENGATVSNEHDAGYQNHSGSGNIVKAEEDVHINSSCMSNIKGVQHNDSTISKANKDTVLVNQSNSVKETSCERHQVPVDVSISEPPQVAPAETVTSATSDDQPCPTHNMKLADKALEDSILEEAQIIEAKRKRIAELSLRSLPTQNHRKSHWGFVLEEMAWLANDFAQERLWKIAAAAQLGHQAAFTCRSRFEKLNKQLGTKILSHRIAKAVMQFWHSAELLLDNDLDINCIVGCVESGKVDANEALRDQRRNFNMLLETRKFLEGQNPVKHAALKVHAYALRFLKASRSCGISSQAETPTTPEKIFDPGSVDMSWDEHLNEENLFYKVPPTAMETYRKAIESHFLQFKKTGSSIQEEVETSVYDTATEFGSQENAYDEEEGETSTYYLPSVFEGNKSSTSAQKKHKNLQSYAPRCGDAGADLPCVHYKTGTQPSMLFGKRPASLNVGSIPTKRMRTATRHRVVSPFTVNIGTVQAQAKADASSGDTNSFHDDQSTLHVGPLIQKSNEVESVADFENQLSYDYAETFVKTKKKKKAKTLGSTYDQGWQLDSVLNEQRDQSKKRGDSNHFESNGSSGLYGQHNVKKPKIMGQSVDSPLDNIVPMSNSIPSPAASQMSNMSNPNKFIKIISGRDRGRKAKVLKIPAGQPGSGSSWSLFEDQALVVLVHDMGPNWELVSDAINSALQIKCVFRKPKECKERHKILMDRTTGDGADSAEDSGSSQSYPSTLPGIPKQGSARQLFQRLQGPMEEDTLKSHFEKIIKIGQKQHYFKNQVYNQDLKQLVPVHDSHAMAGSLISPNNLNGSILTPLDLCEAEETNPDVPALGYQGSHAGGLTLPNQGSVPSMLPTSGVNSSLPGSSGMVLGHNLSSSSGPIAASVRGGRYGMPRNSPSSVDEHQRIQYNQMLSGRNIQQSMSVAGTLSGSDHGVRMLPGGNGMALMGGINKTMAMSRPGFQGMASPSMINSGSMLSSSMVGMPSPVNMHFGVGPGQGNSMLRPHETLHMMRPGHNPEHQRQMMVPELQMQVTQGNSQGIPALCGLSSAFSNQTTPPVQPYPGHAQQPHQLSQSQSHLSNPRPHLQGPSHATNSQQAYAVRLAKERQLQQRYLQHQQQLAASNALMPHVQAKSQLPISSSPLQNSSQVQPQNSSQQVPLSPITPSSPLTPMSSQLQQQKFHQTQPGFGRNPTASGLTSQAAKQHPRHPPHQPQQQYQQPSRQHPNQRHNGQSQQQAKLLKGMGRGNVLVHQNLSVDTSHLSGLSLPAGSQTGEKGDQIMHMMQGQNLYPGSGLNLNQPSKPLGHAHSSNHSQLQQKLHSGSPTTSSKQLHIPSDASAQGQVSPVSSGQLLSPPQPAVIASNHHQLQPQTQSKKINQTQTNVQRMLTLNHHVHSESSSKSQSDPTQADQQPANSASQVSACATMTQGCIDSISVVPGVTTVSSQWKTPEPPFDSTVNNQTTQVSSLGSAPVGSSTGNEQPTISQGLGPRSVNLTSHTHNSDTQWQQRQPQPLQQSSQPILPQQPYQTEQLQQQQEQEQHSPKDLALQHQPQQHMQHLQSGQSSLFIQPPNSKVE 1991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0546 1991 Pfam Myb-like DNA-binding domain 1080 1128 - -
Ssu2g0546 1991 MobiDBLite consensus disorder prediction 1702 1773 - -
Ssu2g0546 1991 SMART bromneu2 567 632 IPR014012 -
Ssu2g0546 1991 MobiDBLite consensus disorder prediction 1139 1158 - -
Ssu2g0546 1991 MobiDBLite consensus disorder prediction 208 265 - -
Ssu2g0546 1991 Coils Coil 40 60 - -
Ssu2g0546 1991 MobiDBLite consensus disorder prediction 163 268 - -
Ssu2g0546 1991 MobiDBLite consensus disorder prediction 1808 1832 - -
Ssu2g0546 1991 PANTHER CHROMATIN MODIFICATION-RELATED PROTEIN EAF1 A-RELATED 19 1987 - -
Ssu2g0546 1991 MobiDBLite consensus disorder prediction 163 180 - -
Ssu2g0546 1991 ProSiteProfiles Myb-like domain profile. 1078 1130 IPR001005 -
Ssu2g0546 1991 MobiDBLite consensus disorder prediction 1626 1655 - -
Ssu2g0546 1991 CDD SANT 1079 1125 IPR001005 -
Ssu2g0546 1991 MobiDBLite consensus disorder prediction 1859 1991 - -
Ssu2g0546 1991 MobiDBLite consensus disorder prediction 1549 1655 - -
Ssu2g0546 1991 SMART sant 1076 1132 IPR001005 -
Ssu2g0546 1991 MobiDBLite consensus disorder prediction 1461 1512 - -
Ssu2g0546 1991 MobiDBLite consensus disorder prediction 1131 1158 - -
Ssu2g0546 1991 PANTHER CHROMATIN MODIFICATION-RELATED PROTEIN EAF1 A-RELATED 19 1987 IPR044798 GO:0035267
Ssu2g0546 1991 Pfam HSA domain 572 609 IPR014012 -
Ssu2g0546 1991 MobiDBLite consensus disorder prediction 107 136 - -
Ssu2g0546 1991 ProSiteProfiles HSA domain profile. 566 640 IPR014012 -
Ssu2g0546 1991 MobiDBLite consensus disorder prediction 1705 1773 - -
Ssu2g0546 1991 MobiDBLite consensus disorder prediction 1549 1619 - -
Ssu2g0546 1991 MobiDBLite consensus disorder prediction 982 1009 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0546 Ssu-Chr2 31749751 31776972 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0546 - - gmx:100811365 3182.12