Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0543 ATGGCTTCACAGGAGACTCACTCTTGGACGTTGGGAGGACTTATTGGTGCCTTTATTGacctttttttagcttatttcttACTATGTGGATCAGCTTTTGCTTTCTTTGTGTCCAAATTAGTTAGGTTTTTTGGACTTTGTTTGCCTTGTCCCTGCAAGGGGAGTTTTGGGTATAGGAATAGCCGTTTCTGTGTGCATAGAGTGCTGTTTGAATGGCCTTCAAGGAAGATATGTTCCATTCAAGTTATGGCGGTTAAACGGTTCCCTTTTGATCTGGTTCGGGTGAAGGGTCATTCATGCAGTGCCAATGATAAAATTGTTGCTGAGAGAACACCTGATAATAGGGTTGCTGAGTTGGAAGATGAGGCATCTTGCAGTTCATGTTCAGGAGTGCGTTTGCCTTCCTTAGTTGATAGGGAAAACGTGTATGATGCTAAGGGGAAGAGGGTCATGAGTATGAAACGAAGGTCTGGAATTCGGCGCCGGAGGAGGGGTAGTTATGATTGTGGGAAGGTCTCTTCAGCTGCTCCTGGTGATAATCTACAACCTGATGTTGCTCTCACTCCTTGCTTGCCTTGTGATGGCAGTATAATTAGATATAAAACCAATGCAAGCATAAATCCTACCTCAGGGAAAGGAGCTAGTGTAGTTGATGCTGAAGATGATCAAACTGGCCATGATTTGGATGAAAAGACCTGTCATAGTTATGAATTTAATGAATCTATGGTTAATAGTCCAGAACAGGACAAATGTTCATTGTCATTGGAACACTACATGAGTAATGCGTATGACAATGTCCAGATTGTTGGTAATGAAGAGGATCGTATCAAGATGTTAGAAAATGCACTTGAAGAAGAGAAAGCTGCCTATGCTGCTCTTTACCTTGAGCTAGAGAAGGAGAGAGCTTCAGCTGCTACTGCTGCCGATGAAACCATGGCTATGATATCGCGTCTGCAGGAGGAGAAGGCATCAATGGAAATGGAGATGAGGCAATACCAGAGGATGATAGAAGAAAGATTTGCTTATGATGAAGAAGAGATGGATATTCTGCAAGAGATCCTTATAAGAAGGGAAAGGGAGAACCACTTTCTGGAAAAGGAACTTGAAGCTTATAGGAAGATGGACTTGAAAGGAAGTGACCAATCATATGGCAAGGCAAAGGTGCAACATGATGAATGGGAGCAAAGACCTCCAATTTCAGTTGAAACATATGAAGATCGAAGCACCATATCATTTGCTAAGAAAGATGAAATATCAGATGTTTCCTCAAATTATATGGTTGTTCAAACTTGCATGGATACAGAAGATGGAGAAGAGCTGGAGAAAAACACAAAACATAAGGTTCATAGCTTGTTTTATGATACTGAACCGGATGTTCTTGATGTTCATGTCATTGATGACAACATAGAAGTACTAAGGGAAgaggaaaatgaaaagttaagtaGCTCTTCATTGAGTACTGTTACAGACAAACTCACAAATAGATATCTTGAATTTGGAAGTCTAACAGTACCAAGCAGTGAGGTATTAAGTAATTGTCCAAGGACAGAGAAGACAGAAAATGGTAATTGTGTTGATGGCCCGACTAGTCAGTTATCCATGTTCTCAAACTCAAGATGCAAAACATTGTCTTACGATTCTGGAAGTGATTCTTCAAGTGCAGttacaaatgaaaagttaaaGATTGGCAATGAGATTGAAATTCTCGGAGAAAGGCTTAGGATGCTAAAACATGGAAAGGAAAAATTGTCTTTCTTTGCGGAGAATGGAGAAAGTGAAAAAGGTCGGTTGAAGCTTCTGGAGGAGATAGCAAACCATCTTCAACAGATTAAACAGCTGAGAAACACTGTGCGGGGGGCTTCCTTGCCCCCTTCCTCATCTAAGGTGAGCTTGAAGAAAAGACGCTGCCAAAGTGTGTCTTTGGAGACATGTGAAAGCAGCTAA 1944 0.4028 MASQETHSWTLGGLIGAFIDLFLAYFLLCGSAFAFFVSKLVRFFGLCLPCPCKGSFGYRNSRFCVHRVLFEWPSRKICSIQVMAVKRFPFDLVRVKGHSCSANDKIVAERTPDNRVAELEDEASCSSCSGVRLPSLVDRENVYDAKGKRVMSMKRRSGIRRRRRGSYDCGKVSSAAPGDNLQPDVALTPCLPCDGSIIRYKTNASINPTSGKGASVVDAEDDQTGHDLDEKTCHSYEFNESMVNSPEQDKCSLSLEHYMSNAYDNVQIVGNEEDRIKMLENALEEEKAAYAALYLELEKERASAATAADETMAMISRLQEEKASMEMEMRQYQRMIEERFAYDEEEMDILQEILIRRERENHFLEKELEAYRKMDLKGSDQSYGKAKVQHDEWEQRPPISVETYEDRSTISFAKKDEISDVSSNYMVVQTCMDTEDGEELEKNTKHKVHSLFYDTEPDVLDVHVIDDNIEVLREEENEKLSSSSLSTVTDKLTNRYLEFGSLTVPSSEVLSNCPRTEKTENGNCVDGPTSQLSMFSNSRCKTLSYDSGSDSSSAVTNEKLKIGNEIEILGERLRMLKHGKEKLSFFAENGESEKGRLKLLEEIANHLQQIKQLRNTVRGASLPPSSSKVSLKKRRCQSVSLETCESS 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0543 647 PANTHER - 437 630 - -
Ssu2g0543 647 Coils Coil 596 616 - -
Ssu2g0543 647 ProSiteProfiles GTD-binding domain profile. 274 372 IPR007656 -
Ssu2g0543 647 Coils Coil 269 300 - -
Ssu2g0543 647 PANTHER BNAANNG28530D PROTEIN 437 630 - -
Ssu2g0543 647 Pfam Zein-binding 278 368 IPR007656 -
Ssu2g0543 647 PANTHER BNAANNG28530D PROTEIN 5 410 - -
Ssu2g0543 647 Coils Coil 354 374 - -
Ssu2g0543 647 Coils Coil 308 338 - -
Ssu2g0543 647 PANTHER - 5 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0543 Ssu-Chr2 31663133 31666449 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0543 - - gmx:100809228 969.148