Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g1858 . . . Aed10g1091 Aev08g2237 . . . . . . Apr1g0833 . Bach2g02115 . Bva06g01335 Car05g00725 Cca03g00488 . Dod09g0303 . . Gma04g01758 Gma06g01644 Gso4g1526 Gso6g1547 Lal17g0931 . . . . . Lapu9g00744 . . . . . Lja1g5644 . . . . . . Phco7g02149 . Psa5g4630 Pste2g00647 Pumo10g02060 Rops10g00637 Seca4g03103 Spst9g02409 Ssu1g2208 . . . Tsu03g01680 Vian4g00838 . Vimu10g01205 . . Vra5g0492
Pvu9g1859 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1860 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1861 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1862 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g02150 . . Pste2g00636 . . . . . . Tpr3g4439 . . . . . . Vivi3g06406 .
Pvu9g1863 Acco13g0636 Accr12g00577 . Aed10g0963 Aev08g2230 . . Aip01g01919 Alju13g1553 . . Apr1g0835 Arst3g04955 Bach2g02111 Bisa02g1330 Bva06g01331 Car05g01752 Cca03g00491 Dere14g0548 Dod09g0307 Enph5g0505 Glsi13g1268 Gma04g01756 Gma06g01647 Gso4g1522 Gso6g1552 Lal17g1109 . . . . . Lapu9g00746 Lasa5g02227 . . . . Lja1g5642 Mal2g2358 . . Mibi13g0627 . . Phco7g02151 . . Pste2g00194 Pumo10g02063 Rops10g00634 Seca4g03110 Spst9g02241 Ssu1g2207 Sto12g0812 . . . Vian4g00835 . Vimu10g01201 Viun9g01182 . Vra5g0490
Pvu9g1864 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1865 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g02153 . . Pste2g00872 . . . . . . . . . . . Vimu10g01197 . . Vra5g0486
Pvu9g1866 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1867 . . . Aed10g0966 . . . . . . . Apr1g0839 . . . . . Cca03g00495 . . . . Gma04g01749 . Gso4g1517 . . . . . . . . . . . . . Lja1g5639 . . . . . . Phco7g02158 . . . Pumo10g02066 . Seca4g03116 Spst9g02245 Ssu1g2205 . . . . Vian4g00831 . Vimu10g01179 Viun9g01176 . Vra5g0477
   
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Select Species Gene Chromosome Start End Strand
Aip Aip01g01919 Chr01 102722280 102725260 +
Pvu Pvu9g1858 Chr9 26433393 26437098 -
Aed Aed10g1091 Chr10 9945183 9952443 +
Aev Aev08g2237 Chr08 21518900 21524635 +
Apr Apr1g0833 Chr1 10846031 10850568 -
Bach Bach2g02115 Chr2 28309656 28312341 +
Bva Bva06g01335 Chr06 9996658 9999562 +
Car Car05g00725 Chr05 41226177 41229650 -
Cca Cca03g00488 Chr03 7967208 7973148 -
Dod Dod09g0303 Chr09 4637471 4644566 -
Gma Gma04g01758 Chr04 47061494 47069077 +
Gma Gma06g01644 Chr06 16267314 16272634 -
Gso Gso4g1526 Chr4 44219115 44226068 +
Gso Gso6g1547 Chr6 15931980 15938151 -
Lal Lal17g0931 Chr17 7387004 7391990 -
Lapu Lapu9g00744 Chr9 9906507 9911581 -
Lja Lja1g5644 Chr1 99080990 99085133 +
Phco Phco7g02149 Chr7 38110161 38113702 -
Psa Psa5g4630 Chr5 409690473 409694619 +
Pste Pste2g00647 Chr2 6548745 6564098 -
Pumo Pumo10g02060 Chr10 27659592 27664960 -
Rops Rops10g00637 Chr10 15671841 15677015 +
Seca Seca4g03103 Chr4 53213001 53216256 -
Spst Spst9g02409 Chr9 57022236 57031886 +
Ssu Ssu1g2208 Chr1 62691753 62697330 +
Tsu Tsu03g01680 Chr03 17007083 17008330 +
Vian Vian4g00838 Chr4 11208848 11212120 +
Vimu Vimu10g01205 Chr10 11934243 11936995 -
Vra Vra5g0492 Chr5 5660032 5662862 +
Pvu Pvu9g1859 Chr9 26440462 26440906 -
Pvu Pvu9g1860 Chr9 26441665 26442449 -
Pvu Pvu9g1861 Chr9 26465898 26465904 +
Pvu Pvu9g1862 Chr9 26467035 26468701 +
Phco Phco7g02150 Chr7 38147077 38148612 +
Pste Pste2g00636 Chr2 6340105 6342675 +
Tpr Tpr3g4439 Chr3 49447610 49449056 +
Vivi Vivi3g06406 Chr3 174022890 174025162 -
Pvu Pvu9g1863 Chr9 26482201 26488228 +
Acco Acco13g0636 Chr13 4648962 4651689 +
Accr Accr12g00577 Chr12 5419867 5422599 +
Aed Aed10g0963 Chr10 8351530 8358121 +
Aev Aev08g2230 Chr08 21457887 21458825 -
Aip Aip01g01919 Chr01 102722280 102725260 +
Alju Alju13g1553 Chr13 33800031 33801744 -
Apr Apr1g0835 Chr1 10936573 10943353 +
Arst Arst3g04955 Chr3 125258065 125262759 +
Bach Bach2g02111 Chr2 28291182 28294080 -
Bisa Bisa02g1330 Chr02 22698331 22702047 +
Bva Bva06g01331 Chr06 9978780 9984847 -
Car Car05g01752 Chr05 62635149 62640978 +
Cca Cca03g00491 Chr03 8030370 8036775 +
Dere Dere14g0548 Chr14 5625802 5630587 -
Dod Dod09g0307 Chr09 4724072 4731426 +
Enph Enph5g0505 Chr5 4135886 4138511 +
Glsi Glsi13g1268 Chr13 30118251 30124772 -
Gma Gma04g01756 Chr04 47032141 47035194 -
Gma Gma06g01647 Chr06 16324548 16331766 +
Gso Gso4g1522 Chr4 44162467 44169104 -
Gso Gso6g1552 Chr6 15979131 15986154 +
Lal Lal17g1109 Chr17 10124085 10129925 +
Lapu Lapu9g00746 Chr9 9962677 9968778 +
Lasa Lasa5g02227 Chr5 463399245 463402359 +
Lja Lja1g5642 Chr1 99021789 99025011 -
Mal Mal2g2358 Chr2 29426065 29429425 -
Mibi Mibi13g0627 Chr13 8211847 8214588 +
Phco Phco7g02151 Chr7 38176404 38179820 +
Pste Pste2g00194 Chr2 1019317 1025472 -
Pumo Pumo10g02063 Chr10 27692946 27696053 +
Rops Rops10g00634 Chr10 15602603 15608991 -
Seca Seca4g03110 Chr4 53378199 53383413 +
Spst Spst9g02241 Chr9 51059024 51062088 +
Ssu Ssu1g2207 Chr1 62641824 62644895 -
Sto Sto12g0812 Chr12 5104568 5114154 +
Vian Vian4g00835 Chr4 11147589 11149577 -
Vimu Vimu10g01201 Chr10 11881346 11888858 -
Viun Viun9g01182 Chr9 10703929 10709738 -
Vra Vra5g0490 Chr5 5620528 5626476 -
Pvu Pvu9g1864 Chr9 26512436 26512501 +
Pvu Pvu9g1865 Chr9 26521123 26521909 +
Phco Phco7g02153 Chr7 38243721 38244779 +
Pste Pste2g00872 Chr2 9387913 9395349 -
Vimu Vimu10g01197 Chr10 11805984 11806409 -
Vra Vra5g0486 Chr5 5561973 5563546 -
Pvu Pvu9g1866 Chr9 26548174 26548569 -
Pvu Pvu9g1867 Chr9 26586384 26589482 +
Aed Aed10g0966 Chr10 8388736 8394615 +
Apr Apr1g0839 Chr1 10996322 10997531 +
Cca Cca03g00495 Chr03 8100073 8109145 +
Gma Gma04g01749 Chr04 46958848 46964623 -
Gso Gso4g1517 Chr4 44084155 44084970 -
Lja Lja1g5639 Chr1 98984834 98986366 -
Phco Phco7g02158 Chr7 38282647 38288524 +
Pumo Pumo10g02066 Chr10 27757814 27758274 +
Seca Seca4g03116 Chr4 53440098 53440610 +
Spst Spst9g02245 Chr9 51671696 51674182 +
Ssu Ssu1g2205 Chr1 62605765 62615812 -
Vian Vian4g00831 Chr4 11030676 11045625 -
Vimu Vimu10g01179 Chr10 11562190 11562950 -
Viun Viun9g01176 Chr9 10483170 10488054 -
Vra Vra5g0477 Chr5 5284697 5286748 -
Spst Spst9g02409 Chr9 57022236 57031886 +