Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1109 ATGAAACTCCGGTCGGTGAAGCTGAGGGAGGCTCACTCCCATAAGGGAGGGCTCCCCTCATTCTGCTCCGTCCTCTGGGACCAACAAGCTCACCATCTTGTCACCGCTTCTAGTTCCGATATTTCAATATCAATTCACGACCCTCTACTTCCTTCAGCCACGCCGAGAACCCTCCGCCACCACCGTGACGGTGTCACCGCCTTGGCTCTTAGCTCTAATTCCACATGCCTTGCTTCTGGATCTATTGATAACACTCTCAAACTATACAAGTTCCCTGGTGGAGAATTCCAGACTAATATAACGAGGTTTACACTTCCAATACGTTCCCTAGCATTTAACAAAAAAGGGAGCATGTTGGCAGCTGCTGGAGATGATGAGGGCATCAAACTTATAAACACGGTTGATGGTTCCATTGCCAGGGTTCTCAAAGGGCATAAAGGGTCCGTCACTGGCTTAGCTTTTGACCCTAATGGTGAATACTTCACATCATTGGATTCAAAAGGAACTGTTGTTATTTGGGAGCTTCACTCTGGAGAAATTCTTCATAACCTCAAAGGCATTGCTCCTGACACTGGCTTAGATGTTTCAACTAGGAATGTTCTTTGCTGGAGCCCTGATGGTCTGACCTTGGCTGTTCCTGGGTTGAGAAATGACATTGTAATTTACGAGAGGGACACTGCTGAAAAGTTGTTCTCTTTAAGAGGTGATCACATAGAACCTATATGTTTCTTGTGTTGGTCACCCAATGGAAAGTACATGGCTACCTCTGGTTTAGACAGGCAAGTTCTGATATGGGATGTTGATAAGAAGCAGGACATTGACAGACAAAAGTTCGATGAAACAATATGTTGCATGGCCTGGAAGCCAACTGGGAATGCCTTAGCTGTTATTGATGTTACGGGAAAGCATGGTGTCTGGGAGTCTATTATTCCTTCATCTATGAAGTCTCCAATTGAGGATATACCAAAGCAAGGTAACATTAGTAATGGACTTCTTTTGTTTGACGAGGATGATCCAGAAAATAGTGCAAGTGGAGGAAGTTTGAGTGATACTGGTGAAAATTGTAATGGTGAATTTGAGCCACCTAGTAGGAAAAGATTGCGTAAGGTGTCTTTTAGCGAGGAAAATTTAGAAGAGAATGATGTTTCTGATGAAGTTGCTTTCTATCCGTTGGTTCAATCTCGTAAGAAGCGAAGTCACTCCCACAAGAAAAACTTGGATAGTGTGAATGGGGGATCTAAAAGCACAACGGTACCAACATCTAAGACAAAGATGCAGGAGGCATTTCAGTCTGGTTCCACACCTATGCAGCCTGGTAAAAGGCGCTTCTTATGTTACAACATGCTTGGAACTATAACTACTGTTGAACATGATGGATACTCACATATTGAGATTGATTTTCATGATACTGGAAGCGGTCCACGAGTTCCATCAATGACAGATCATTTTGGATTTACAATGGCTGCATTAAATGAGAATGGGAGTGTCTTTGCAAATCCTTGCAAAGGGGAGAAGAACATGAGCACTCTCATGTACCGTCCATTTAGTAGCTGGGCAAATAATAGCGAGTGGTCTATGCGCTTTGAGGGAGAAGAAGTGAAGGTTGTTGCACTTGGTGATGCTTGGGTGGCTGCAGTGACTAGTTTTAACTATCTTCGCATCTTTACTGAAGGTGGTTTGCAGAGATATGTTATTTCTCTAGATGGACCAGTGGTGACTGCATCTGGTTTCAAGGGTAAGCTTGCAGTTGTCACTCATGCCTCTGATTGCCTTTCCTCAAATGATCAGGTGCTAGAGTTTAGAGTATTTAATGTACTTCATGGGACCCAGCCCTTTCGAGGTCGCTTGCCATTAACTCCTGGTTCATCTCTAAGTTGGTTTGGTTTTAGTGAAGAGGGCCAATTGAGTTCCTATGATTCCAAGGGCGTGCTAAGATCATATACAAGTCAATTTGGTGGTAGCTGGCTCCCACTCTTCAGTGCTATTAAAGAGAAGTCAGATGAAAACTATTGGTTGACGGGGTTGAATGCAAGTAAGTTGTTTTGTGTGGTATGCAAAAAGCCTGACAACTTCCCACAGGTGATGCCCAAACCAGTTCTCACTCTACTGAATCTTTCGTTTCCTCTTGCATCCTCTGATCTGGGATCTGAAGCCCTTGAAAATGAGTTTATGATGAACAACATGCATCTCTTTGAGATTCAGAAAAGAATGGAAGAAATGACTAGGGCCGGTTTGGACCCTAGTTCCCTTGATGATGATGCTTTCAATTTTGAAGCAGCGCAGGATAGATGCATACTTAGGCTAATAGCATCCTGCTGCAACGGTGATAAGCTTGTGCGAGCTACTGAACTTCTCAAGCTTTTGTCTCTGGAAAAATCAATGAAAGGTGCAATAAAACTTGTTACTGCTCTGAAGCTTCCAAACTTGGCTGAAAGGTTCAGCAGCATACTAGAGGAAAGGCTACTTAATGAAATGAAGAAAAATAAGGAAACCAAAACCCAAGAAAACTATCTTGCACCAATTTCAGCTGATGCTCAACTTAGCAGGAGCATGCCCCCAACTAAGACTGAAGCATCAAAAACAGTTAATAGTATATCATCATCACCAAAATTATCAGCTCCGATATTCACAAAGAAAAACAAAACACCAGAGGAAGCTAAAGCCGGAATAAATAGAAAAACGATGGCGAATGAAAGTCTAATGGCAAGGGAAACAGGGATTGAAAAAAGTGACAAGTTGGGCAAGATGGGGGAAAGGAGTCAGGTGCAACCTTCTAACCCACATGATCCTTCTATGAAGTCAAATAAACAAGTAGTTAACAAATCAGAGCCTAGTTTGGCACAACCAAGTCGACCTTCTAATCCATTTTTGAAGTCTTCTATCAAGTGA 2889 0.4282 MKLRSVKLREAHSHKGGLPSFCSVLWDQQAHHLVTASSSDISISIHDPLLPSATPRTLRHHRDGVTALALSSNSTCLASGSIDNTLKLYKFPGGEFQTNITRFTLPIRSLAFNKKGSMLAAAGDDEGIKLINTVDGSIARVLKGHKGSVTGLAFDPNGEYFTSLDSKGTVVIWELHSGEILHNLKGIAPDTGLDVSTRNVLCWSPDGLTLAVPGLRNDIVIYERDTAEKLFSLRGDHIEPICFLCWSPNGKYMATSGLDRQVLIWDVDKKQDIDRQKFDETICCMAWKPTGNALAVIDVTGKHGVWESIIPSSMKSPIEDIPKQGNISNGLLLFDEDDPENSASGGSLSDTGENCNGEFEPPSRKRLRKVSFSEENLEENDVSDEVAFYPLVQSRKKRSHSHKKNLDSVNGGSKSTTVPTSKTKMQEAFQSGSTPMQPGKRRFLCYNMLGTITTVEHDGYSHIEIDFHDTGSGPRVPSMTDHFGFTMAALNENGSVFANPCKGEKNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVALGDAWVAAVTSFNYLRIFTEGGLQRYVISLDGPVVTASGFKGKLAVVTHASDCLSSNDQVLEFRVFNVLHGTQPFRGRLPLTPGSSLSWFGFSEEGQLSSYDSKGVLRSYTSQFGGSWLPLFSAIKEKSDENYWLTGLNASKLFCVVCKKPDNFPQVMPKPVLTLLNLSFPLASSDLGSEALENEFMMNNMHLFEIQKRMEEMTRAGLDPSSLDDDAFNFEAAQDRCILRLIASCCNGDKLVRATELLKLLSLEKSMKGAIKLVTALKLPNLAERFSSILEERLLNEMKKNKETKTQENYLAPISADAQLSRSMPPTKTEASKTVNSISSSPKLSAPIFTKKNKTPEEAKAGINRKTMANESLMARETGIEKSDKLGKMGERSQVQPSNPHDPSMKSNKQVVNKSEPSLAQPSRPSNPFLKSSIK 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1109 962 MobiDBLite consensus disorder prediction 828 962 - -
Lal17g1109 962 MobiDBLite consensus disorder prediction 342 356 - -
Lal17g1109 962 MobiDBLite consensus disorder prediction 335 367 - -
Lal17g1109 962 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Lal17g1109 962 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Lal17g1109 962 MobiDBLite consensus disorder prediction 406 435 - -
Lal17g1109 962 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Lal17g1109 962 MobiDBLite consensus disorder prediction 397 435 - -
Lal17g1109 962 CDD WD40 56 296 - -
Lal17g1109 962 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Lal17g1109 962 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
Lal17g1109 962 MobiDBLite consensus disorder prediction 919 962 - -
Lal17g1109 962 Gene3D - 3 195 IPR015943 GO:0005515
Lal17g1109 962 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Lal17g1109 962 Pfam Minichromosome loss protein, Mcl1, middle region 428 709 IPR022100 -
Lal17g1109 962 Pfam WD domain, G-beta repeat 140 173 IPR001680 GO:0005515
Lal17g1109 962 Pfam WD domain, G-beta repeat 230 266 IPR001680 GO:0005515
Lal17g1109 962 Pfam WD domain, G-beta repeat 56 89 IPR001680 GO:0005515
Lal17g1109 962 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Lal17g1109 962 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 941 - -
Lal17g1109 962 MobiDBLite consensus disorder prediction 834 875 - -
Lal17g1109 962 Gene3D - 196 308 IPR015943 GO:0005515
Lal17g1109 962 SUPERFAMILY WD40 repeat-like 22 307 IPR036322 GO:0005515
Lal17g1109 962 SMART WD40_4 4 47 IPR001680 GO:0005515
Lal17g1109 962 SMART WD40_4 51 90 IPR001680 GO:0005515
Lal17g1109 962 SMART WD40_4 135 174 IPR001680 GO:0005515
Lal17g1109 962 SMART WD40_4 93 132 IPR001680 GO:0005515
Lal17g1109 962 SMART WD40_4 226 266 IPR001680 GO:0005515
Lal17g1109 962 SMART WD40_4 269 307 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1109 61 294 Miscellaneous Gene Families AT5G08390 25.210 1.67e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1109 K11274 - gmx:100818807 1451.42