Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4439 ATGAAGCGAAGAAGACAAAGATATAACAACAATGTAAAAGAAGATCGGCTTAGTAATTTACCTGATTTCCTTTTACTTCACATACTGTCCTTTGTGGATACCAAACACGCCGTTCAAACTTGTATACTGTCCACAAGATGGAAAAATATCTGGAAGCATCTTCCCACTCTAACATTGCATTCCTCACGCTTTAGGAATATGAAGGATTTTACAAAATTTGTGTCTCGTATTTTGTCTCTTCGTGAAGAATCAACAACACTACAATCTCTTGATTTTCAGCGCAGTGGTATCGTGGAGCCTCACTTACTCAAAAGGATTGTTAAATACGTTGTTTCACACAATGTCCAGCGATTACGAATCAATATAAGATGTGATTTTCAACACTTTCAAACTTGTTTGTTTTCATGTCACACTTTAACCTCTCTTGACCTTTCTGTTGTTCACTCTAGAACCTCGGAAAAATTATTATTTCCTAGTTCCCTTAATTTACCGGCATTAACAAGTTTGTCTCTACAGTCATTTGCCTTTCCTGTTGGCAATGATGGTCGCACTGAACCTTTTATGACATTACAAAACTTGAATAGTTTGATCATCCGGCGTTGTAAAGTTATTGATGCACATACCATTTGCATATCAAGTGCTACACTTGCTAATTTAACTTTAGAAACACATCTCGGTGACTATTGCGAAATTGAGTTATCTACTCCAAGTCTTTGCACCTTTGTCTGTGTTTGTATCGAGGTTATTCCTACTCTGAAACTTTGCGCGAGCAAGACCAATCTCTCTTCTGTAAAACATGTAGCTATTCATGTATTTTGTCCATCCAGATCTATAAAAACTTCATTGGTTCTACTCAACTGGTTGGTTGAGCTTTCTAATATCAAATCATTGATTATTAATTCTTCTATTCTTGAGGTTCTCTCCTTAGTTCCTGATTTATTGAAGGTTGAGTTCCGTTCCTTTTGTAACTTGAAGTCGCTTAAAGTACACAAGTACATACCTTCATCCGAACCTAACGGAGTATTGGACTTTTTGCTTCAAAACTCGCCTACAACAAAGGCTGAAATCATAAACTTATTTAGGTAA 1086 0.3637 MKRRRQRYNNNVKEDRLSNLPDFLLLHILSFVDTKHAVQTCILSTRWKNIWKHLPTLTLHSSRFRNMKDFTKFVSRILSLREESTTLQSLDFQRSGIVEPHLLKRIVKYVVSHNVQRLRINIRCDFQHFQTCLFSCHTLTSLDLSVVHSRTSEKLLFPSSLNLPALTSLSLQSFAFPVGNDGRTEPFMTLQNLNSLIIRRCKVIDAHTICISSATLANLTLETHLGDYCEIELSTPSLCTFVCVCIEVIPTLKLCASKTNLSSVKHVAIHVFCPSRSIKTSLVLLNWLVELSNIKSLIINSSILEVLSLVPDLLKVEFRSFCNLKSLKVHKYIPSSEPNGVLDFLLQNSPTTKAEIINLFR* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4439 361 Gene3D - 1 57 - -
Tpr3g4439 361 ProSiteProfiles F-box domain profile. 14 67 IPR001810 GO:0005515
Tpr3g4439 361 SUPERFAMILY F-box domain 13 63 IPR036047 GO:0005515
Tpr3g4439 361 Pfam F-box domain 17 53 IPR001810 GO:0005515
Tpr3g4439 361 PANTHER CYCLIN-LIKE F-BOX 12 354 - -
Tpr3g4439 361 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 12 354 - -
Tpr3g4439 361 SUPERFAMILY RNI-like 43 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4439 Tpr-Chr3 49447610 49449056 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4439 3 174 EF-hand Containing Proteins AT5G41840 26.042 5.54e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4439 - - mtr:MTR_8g066650 345.895