Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01680 ATGAAGCGAAGAAGACAAAAATATAACAACCATGTAAAAGAAGATCGACTCAGTAATTTACCTGATTTTCTTTTAGTTCACATACTCTCCTTTGTGGACACCGAACACGCAGTTCAAACTTGCATACTATCCATAAGATGGAAGAATATCTGGAAGCATCTTCCCACTCTAACATTACATTCCTCGCGCTTTAGGAATCTCAAGGATTTTACAAAATTTGTGTCTCGTATTTTGTCTCTTCGCGAAGCATCAACAACACTACACTCTCTTGATTTTCAGCGCAGTGGTATCGTGGAGCCTCACCTACTCAAAAGGATTGTTAAATACGTTGTTTCACACAATGTCCAGCAATTACGAATCAATATAAGTTGTGATTTTCAACACTTTCCAACTTGTTTGTTTTCATGTCACACTTTAACCTCTCTTGACCTTTCTGTTCACTCTAAAAATTCGGAGAAATTATTGTTTCCTAATTCTCTTAATTTACCGGCATTAACAAGCTTGTCTCTACAGTCATTTGCCTTTCCTGTTGGCAATGATGGCCGCGCCGAACCTTTTATGACATTACACAACTTGAATAGTTTAATCATCCGGCGTTGTAAAGTTCTTGATGCAGATACCATTTGCATATCAAGTGCCACACTTGCCAATTTAACTTTAGAAATACATCTCGGTGACTATTGCGAAATTGAGTTATCTACTCCAAATCTTTGCACCTTTGTCTTTGTTTGTACCATGGTTATTCCTGCTCTGAAACTCGGTGGGAGTAAGACCAATCTCTCTTCTGTCAAACATGTAGCTATTCATGTATTTTGGCTGCCCAGATCTGTAAAAACTTCATTGGTTCTACTCAACTGGTTGGTTGAGCTTTCTAATATCAAATCATTGACTATTAATTCTTCTACTCTTGAGGTTCTCTCCTTAGTTCCTGATATATTGAAGGTTGAGTTCCGTTCCTTGTGTAATTTGAAGTCGCTTAAATTACACATGTACATACCTTTATCCGAAACTAACGGAGTATTGGACTTTTTACTTCAAAACTCACCCGCAACAAAGGCTGAAATCATAAATTTATTGCAA 1080 0.3731 MKRRRQKYNNHVKEDRLSNLPDFLLVHILSFVDTEHAVQTCILSIRWKNIWKHLPTLTLHSSRFRNLKDFTKFVSRILSLREASTTLHSLDFQRSGIVEPHLLKRIVKYVVSHNVQQLRINISCDFQHFPTCLFSCHTLTSLDLSVHSKNSEKLLFPNSLNLPALTSLSLQSFAFPVGNDGRAEPFMTLHNLNSLIIRRCKVLDADTICISSATLANLTLEIHLGDYCEIELSTPNLCTFVFVCTMVIPALKLGGSKTNLSSVKHVAIHVFWLPRSVKTSLVLLNWLVELSNIKSLTINSSTLEVLSLVPDILKVEFRSLCNLKSLKLHMYIPLSETNGVLDFLLQNSPATKAEIINLLQ 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01680 360 Gene3D - 1 57 - -
Tsu03g01680 360 SUPERFAMILY RNI-like 47 335 - -
Tsu03g01680 360 ProSiteProfiles F-box domain profile. 14 67 IPR001810 GO:0005515
Tsu03g01680 360 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 12 353 - -
Tsu03g01680 360 SUPERFAMILY F-box domain 5 64 IPR036047 GO:0005515
Tsu03g01680 360 PANTHER CYCLIN-LIKE F-BOX 12 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01680 Tsu-Chr3 17007083 17008330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01680 3 307 EF-hand Containing Proteins AT5G41840 24.069 6.52e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01680 - - mtr:MTR_8g066650 349.747