Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0486 ATGAGAAGGTTGTTAATGATGTTGGGACTATACGTCCTAGTGTTGTCCCCATTTCCAGTTGCGTTATCGGAGCGGTGCCACCCACAAGACAAGAAGGTGCTCCTCCGCTTCAAAAAGGAACTCAACAACCCTTACTTCTTAGCTTCTTGGGACCCAAAAGAGGATTGCTGTGACTGGTACTGTGTTAAGTGTGACGACAGAAATAATCGTATCTACACCATATTTCTAAAATCCGATGAGCCAGACCCCAATGTCACCGGCCAAATACCACCCTCTGTGGGTGACCTCCCTTACCTCCGGGGCCTCAACTTCCACAACCTCCCCAACCTAGTCGGCCCAATTCAGCCCACCCTCGCCAAACTCCACAAACTAGAAGGTATCTTTTTCTCCAATACTGGTATCTCAGGCCCAATACCTGAATTTCTGGCCCATATTAAGACCCTCCAGTATATCGAACTTTCCTCTAACAGACTGTCGGGCCCCATTCCCAGCTCACTTTCCCAACTGCCTAATCTCATCTCTCTCCAGCTGGACAGGAACAAATTGACGGGCACAATCCCGGCCTCTTTTGGATCCTTCAAGAAGCCCGGGCCAGATCTCATCCTCTCTCACAACCAACTTTCCGGGCCCATTCCCACTTCCTTGGGCAACCTAGACCCAGACAGGATAGACTTGTCAGGGAACAACTTCGTAGGCGATGCTTCATTTCTTATCGGGAGCAAGAAAAAGATTCGCGTATTTGACCTTTCCAGGAACGCCTTCTCCTTTGATCTGTCTCGTTTGACGTTTCCCAAGGAAACCTTAACTTGGTTGGATATCAGTCACAATAACATTTATGGCAGCATTCCAACGGCGTTGACCAAAGTGCGATATTTCCAGCAATTGAACTTCAGTTTTAATCCTGGCTTGAAGGGTCAAATACCGCAGGGTGGGGGATTGCAAACATTCGATAAATATTCCTATTTTCACACTAACTTGTGTGGCTCTCCACTTCCGCCCTGCACTAAATAG 1011 0.4797 MRRLLMMLGLYVLVLSPFPVALSERCHPQDKKVLLRFKKELNNPYFLASWDPKEDCCDWYCVKCDDRNNRIYTIFLKSDEPDPNVTGQIPPSVGDLPYLRGLNFHNLPNLVGPIQPTLAKLHKLEGIFFSNTGISGPIPEFLAHIKTLQYIELSSNRLSGPIPSSLSQLPNLISLQLDRNKLTGTIPASFGSFKKPGPDLILSHNQLSGPIPTSLGNLDPDRIDLSGNNFVGDASFLIGSKKKIRVFDLSRNAFSFDLSRLTFPKETLTWLDISHNNIYGSIPTALTKVRYFQQLNFSFNPGLKGQIPQGGGLQTFDKYSYFHTNLCGSPLPPCTK* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0486 336 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Vra5g0486 336 Gene3D Ribonuclease Inhibitor 25 335 IPR032675 -
Vra5g0486 336 PANTHER POLYGALACTURONASE INHIBITOR 1 5 334 - -
Vra5g0486 336 SUPERFAMILY L domain-like 25 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0486 Vra-Chr5 5561973 5563546 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0486 84 325 Receptor kinase-like Gene Family AT2G15080 29.206 2.49e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0486 - - var:108330570 551.592