Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0941 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0942 . . . . . . . . Aev05g1385 Aev03g0487 Ahy15g1599 Ahy13g3762 Aip05g01695 Aip03g04198 . . . Amo13g4738 . Apr3g0857 . . . . . . Bva08g01406 . Car02g00676 . . . . . . Dod04g1021 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja2g1080 . . . . . . . . . . . . . . . . . Psa2g2634 Psa4g3000 . . . . . . . . . . . . . . . . . . Sto11g1028 . . . . . . . . . . . . . . . . . . .
Vvi1g0943 . . . . . . Aed11g0282 . . . Ahy15g1601 . Aip05g01696 . . . . . Apr7g1554 . . . . . . . Bva08g01407 . . . Cca06g00737 . . . . . . . . . . . . . . . . . . . . Lal23g1022 Lal16g0590 . . . . . . . . . . . . . . . . . . . . . Mal6g1826 . . . . . . . Mtr5g1521 . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto11g1027 . Tpr2g1878 . . . Tsu05g01688 . . . . . . . . . . . Vra11g1296 .
Vvi1g0944 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0945 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0946 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0947 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0948 . . . . . . . . . . . . . . . . . . . Apr3g0858 . . . . . . Bva08g01409 . . Car07g02058 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja4g2716 . Mal5g2613 . . . . . . . Mtr8g1869 . . . . . . . . . . . . . . . . . . . . . . . . . . Sto11g1025 . . . . . . Tsu08g01802 . . . . . . . . . . . .
Vvi1g0949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0950 . . . . Adu05g01678 . Aed11g0286 . . . . . . . . . . . Apr7g1553 . Arst5g02145 . Bach4g01215 . . . Bva08g01410 . Car02g00677 . Cca06g00736 . . . . . . . . . Gma02g00226 Gma01g00365 . . Gso2g0206 Gso2g0206 . . . . . Lal23g1021 . . . . . . . . Lapu2g01504 . Lasa2g00288 . . . . . . . . . Lja2g1081 . Mal6g1827 . . . Mesa17g01962 . . . Mtr5g1522 . . . Phco4g01577 . . . . . Pste1g00560 . . . . . . . Pvu2g0831 . . . . . Spst2g01520 . Ssu2g1670 . Sto11g1024 . Tpr2g1879 . . . Tsu05g01697 . . . . . Vimu7g03964 . . . Vivi2g01774 . Vra11g1294 .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g0941 Chr1 10289971 10290132 -
Vvi Vvi1g0942 Chr1 10300523 10301321 +
Aev Aev05g1385 Chr05 10001160 10006799 +
Aev Aev03g0487 Chr03 3536032 3536846 -
Ahy Ahy15g1599 Chr15 33159721 33166285 +
Ahy Ahy13g3762 Chr13 136643780 136645425 +
Aip Aip05g01695 Chr05 31663831 31666951 +
Aip Aip03g04198 Chr03 126111428 126113122 +
Amo Amo13g4738 Chr13 145315659 145319432 +
Apr Apr3g0857 Chr3 22469693 22471225 +
Bva Bva08g01406 Chr08 7370073 7372664 +
Car Car02g00676 Chr02 8729393 8731695 +
Dod Dod04g1021 Chr04 29720228 29722118 +
Lja Lja2g1080 Chr2 10290786 10293872 +
Psa Psa2g2634 Chr2 302559359 302560340 -
Psa Psa4g3000 Chr4 243848300 243850690 -
Sto Sto11g1028 Chr11 10540055 10543217 -
Vvi Vvi1g0943 Chr1 10305831 10306622 +
Aed Aed11g0282 Chr11 2347802 2352175 +
Ahy Ahy15g1601 Chr15 33183905 33186733 +
Aip Aip05g01696 Chr05 31683837 31688787 +
Apr Apr7g1554 Chr7 22649424 22650483 -
Bva Bva08g01407 Chr08 7370670 7373273 +
Cca Cca06g00737 Chr06 19834498 19838394 -
Lal Lal23g1022 Chr23 12038322 12039826 -
Lal Lal16g0590 Chr16 3823443 3825086 +
Mal Mal6g1826 Chr6 36800524 36803598 +
Mtr Mtr5g1521 Chr5 16280330 16281813 -
Sto Sto11g1027 Chr11 10535204 10539396 -
Tpr Tpr2g1878 Chr2 22374736 22376731 +
Tsu Tsu05g01688 Chr05 17217232 17218794 +
Vra Vra11g1296 Chr11 15886721 15887912 -
Vvi Vvi1g0944 Chr1 10322147 10322361 +
Vvi Vvi1g0945 Chr1 10323137 10323301 -
Vvi Vvi1g0946 Chr1 10326001 10326219 +
Vvi Vvi1g0947 Chr1 10334309 10334740 +
Vvi Vvi1g0948 Chr1 10347285 10348110 +
Apr Apr3g0858 Chr3 22472087 22473661 +
Bva Bva08g01409 Chr08 7373849 7375057 +
Car Car07g02058 Chr07 24950446 24953394 +
Lja Lja4g2716 Chr4 41818356 41825212 -
Mal Mal5g2613 Chr5 76473639 76474049 -
Mtr Mtr8g1869 Chr8 28367850 28369441 -
Sto Sto11g1025 Chr11 10531561 10534124 -
Tsu Tsu08g01802 Chr08 22019586 22021183 +
Vvi Vvi1g0949 Chr1 10374892 10375140 +
Vvi Vvi1g0950 Chr1 10377800 10383562 +
Adu Adu05g01678 Chr05 33020180 33026248 -
Aed Aed11g0286 Chr11 2361171 2369478 +
Apr Apr7g1553 Chr7 22640241 22645491 -
Arst Arst5g02145 Chr5 33112730 33118803 -
Bach Bach4g01215 Chr4 8421444 8425225 +
Bva Bva08g01410 Chr08 7375756 7379944 +
Car Car02g00677 Chr02 8743516 8749336 +
Cca Cca06g00736 Chr06 19828004 19834459 -
Gma Gma02g00226 Chr02 2208326 2214542 -
Gma Gma01g00365 Chr01 4423074 4428636 +
Gso Gso2g0206 Chr2 2151278 2157507 -
Gso Gso2g0206 Chr2 2151278 2157507 -
Lal Lal23g1021 Chr23 12030067 12035694 -
Lapu Lapu2g01504 Chr2 28226421 28232135 -
Lasa Lasa2g00288 Chr2 30930300 30934857 -
Lja Lja2g1081 Chr2 10295110 10300135 +
Mal Mal6g1827 Chr6 36819692 36829142 +
Mesa Mesa17g01962 Chr17 28219893 28224660 +
Mtr Mtr5g1522 Chr5 16287515 16293636 +
Phco Phco4g01577 Chr4 14910791 14916117 +
Pste Pste1g00560 Chr1 1797560 1804201 +
Pvu Pvu2g0831 Chr2 12055002 12060789 +
Spst Spst2g01520 Chr2 13942326 13947283 +
Ssu Ssu2g1670 Chr2 65718009 65724883 -
Sto Sto11g1024 Chr11 10526241 10530606 -
Tpr Tpr2g1879 Chr2 22377268 22383030 +
Tsu Tsu05g01697 Chr05 17338298 17344201 +
Vimu Vimu7g03964 Chr7 37351804 37356429 -
Vivi Vivi2g01774 Chr2 81536195 81546746 +
Vra Vra11g1294 Chr11 15806333 15811529 -