Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1294 ATGGAAGAAAGTGTGAAATTGGACATGTGGGGATACCAGGTCGCAACTTCTTCGCAGGCCTGCGTTTCAGCCATCAACTCCTACTATCATCAGGTTCTCATCTATGGCAGAGAAAGGTCTGTGATTCTGGAAGCAGTGGCACATGACAATCACTGTGTCTTGGCCAACATCTTGGCAGCACATTTCCTTTACTCGCCTGATTATTCTCGTGCTCTCACTTGTCTGCACGCCGCTCAGTCCCACCTTGATCAGGCCACCTTGTACGAGAAACTTGTTTTCGATACCATCAGTTATTTGCTATCCGAAGATAGAGACGACGATGTAGCTCTTCAATTACATTCCAATCTTCTAAAGGAGTTCCCAAGAGATCTGGTTTCTCTAAAGAGAGCACAAGTTTTATGCTTCTACATGGGTCAACCTGGTCTTTCTTTGTCTCTTATTCAACAGGTTCTACCTCAAAATGAAGGACAAAACTACATATATGGCATGCTTGCGTTCCCTTTACTCGAGCTTGGGCAGATGGAGGAGGCTGAGAAAGCTGCCAGTAGGGGATTTGAGATCAATAAGGAAGACATTTGGTCACAGCATGCTTTATGCCATGTGCTTCAGTACAAGTGTTGTTTTAGAGAAGCTGTTAAGTTCATGGAAGAATGTTCATCATCGTGGTGTTCTGCTTCATCTTTCATGTTGACACACAATTGGTGGCATGCAGCCGTTTGTTACTTAGAGGGTAATGCTCCTACACAAAGAGTGTTAGAGATATATGACAATTATATATGGAAGGAGCTAGACAAAGATGATTCTATGAAGGCAGAGGTTTACTTAAATGCTGCTGGTCTGCTTCTGCGGTTGTATGTACGAGGAGAATTGGATATCTATGGTGATCGTCTCAGGTTGCTTGCTGAATGTCTAACTAATGAAGCAAACTGGCATATAGAGTGGCACTTTGATGTCTTGATACTTTGGACTTTGGCAAAGGCTGGAGAAGTTTCTAAAGCAGAAGATCTTCTAAAGGGCTTAAAAAGCAGGTTTTTGAGGATGACTAAAAAGAAGCAACAAAGAATGAAGAGAGGAATGATGCTTGCAGAAGCACTTTATGCGTACGGAATGGGAGATGAGAAACATGGACTGGATTTACTTGATCCAGATTTTGATGCCACTGATTATAAGGTCATTGGGGCATCTGATGAACAGGTGGACGTATTCAATGAAGTTTGGTACAACATGTTGCTGAATACTGGAAAAGCGTTGAAGGCAATCGAAGTGCTGGAGAAGCAAATCAAGAAAAGAGATGGGGTCCCCTACTTGTGGCGTCTACTAGAGAGGGGATACAAATTAGCTAACAAACCAGAAGAAAAAACTGCGAACGAGAAAGCCATTTCTTTGGAGAATCGTTACTTTAACTGA 1407 0.4264 MEESVKLDMWGYQVATSSQACVSAINSYYHQVLIYGRERSVILEAVAHDNHCVLANILAAHFLYSPDYSRALTCLHAAQSHLDQATLYEKLVFDTISYLLSEDRDDDVALQLHSNLLKEFPRDLVSLKRAQVLCFYMGQPGLSLSLIQQVLPQNEGQNYIYGMLAFPLLELGQMEEAEKAASRGFEINKEDIWSQHALCHVLQYKCCFREAVKFMEECSSSWCSASSFMLTHNWWHAAVCYLEGNAPTQRVLEIYDNYIWKELDKDDSMKAEVYLNAAGLLLRLYVRGELDIYGDRLRLLAECLTNEANWHIEWHFDVLILWTLAKAGEVSKAEDLLKGLKSRFLRMTKKKQQRMKRGMMLAEALYAYGMGDEKHGLDLLDPDFDATDYKVIGASDEQVDVFNEVWYNMLLNTGKALKAIEVLEKQIKKRDGVPYLWRLLERGYKLANKPEEKTANEKAISLENRYFN* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1294 468 SUPERFAMILY TPR-like 52 216 IPR011990 GO:0005515
Vra11g1294 468 CDD StaR_like 48 407 IPR033891 -
Vra11g1294 468 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 38 6 465 IPR033891 -
Vra11g1294 468 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Vra11g1294 468 Gene3D Tetratricopeptide repeat domain 44 243 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1294 Vra-Chr11 15806333 15811529 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1294 - - gmx:100803771 815.839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1294 11 15806333 15811529 Vra11g1294 11 15806333 15811529 ECH