Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g0884 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto5g1698 . . . . . . . . . . . . . . . . . . .
Vvi4g0885 . . . . . . . . . Aev07g2283 . Ahy17g1167 . Aip07g01106 . . . . . . . . . . . . Bva13g03468 . . . . . . . . Dod08g0843 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja5g1590 . Mal1g1313 . . . . . . . Mtr1g2843 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr1g1575 . . . Tsu01g03337 . . . . . . . . . . . .
Vvi4g0886 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0887 . . . . . . . Aed3g2006 . . . . . . . . . . . . . . Bach3g01067 . . . Bva13g01367 . . . . Cca05g01416 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa2g01493 . . . . . . . . . . . . . Mepo7g02064 . Mesa17g03415 . . . . . Phac8g03186 . Phco3g00545 . . . . . Pste8g01525 . Pte16g00768 . . . Pumo9g02501 . Pvu8g2475 . Rops9g01041 . Seca8g01208 . . . . Ssu6g2839 . Sto9g2363 . . . . . . Vian7g01720 . Vifa1g01700 . Vimu1g01152 . Viun8g02100 . . . . Vra6g0755
Vvi4g0888 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0889 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0890 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0891 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva13g01365 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0892 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0893 . . . . . . . Aed3g2007 . . . . . . . . . . . . . . . . . . Bva13g01363 . . . . Cca05g01417 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa2g01489 . . . . . . . . . . . . . Mepo7g02068 . Mesa17g03417 . . . . . Phac8g03184 . Phco3g00548 . . . . . Pste8g01523 . . . . . Pumo9g02499 . Pvu8g2474 . Rops9g01040 . Seca8g01202 . . . . Ssu6g2840 . Sto9g2366 . . . . . . Vian7g01719 . Vifa1g01697 . Vimu1g01151 . Viun8g02102 . . . . Vra6g0754
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi4g0884 Chr4 13330552 13332084 -
Sto Sto5g1698 Chr5 12164102 12165658 +
Vvi Vvi4g0885 Chr4 13339675 13341177 +
Aev Aev07g2283 Chr07 23723533 23725124 -
Ahy Ahy17g1167 Chr17 17227420 17229554 +
Aip Aip07g01106 Chr07 15506687 15508883 +
Bva Bva13g03468 Chr13 23653400 23654386 +
Dod Dod08g0843 Chr08 10131104 10139358 +
Lja Lja5g1590 Chr5 16976174 16980675 +
Mal Mal1g1313 Chr1 16827440 16828431 -
Mtr Mtr1g2843 Chr1 39581745 39582876 -
Tpr Tpr1g1575 Chr1 14645639 14647285 +
Tsu Tsu01g03337 Chr01 41313801 41327525 -
Vvi Vvi4g0886 Chr4 13400788 13400892 -
Vvi Vvi4g0887 Chr4 13439180 13454801 -
Aed Aed3g2006 Chr3 24127241 24131705 -
Bach Bach3g01067 Chr3 21048205 21052629 -
Bva Bva13g01367 Chr13 7135420 7141374 +
Cca Cca05g01416 Chr05 32600000 32606211 -
Lasa Lasa2g01493 Chr2 461535281 461539725 +
Mepo Mepo7g02064 Chr7 30941732 30948239 -
Mesa Mesa17g03415 Chr17 60155184 60160479 -
Phac Phac8g03186 Chr8 40300394 40306306 +
Phco Phco3g00545 Chr3 4248423 4253322 -
Pste Pste8g01525 Chr8 8515840 8521886 +
Pte Pte16g00768 Chr16 25364972 25372801 +
Pumo Pumo9g02501 Chr9 59697175 59703070 +
Pvu Pvu8g2475 Chr8 55358387 55364271 +
Rops Rops9g01041 Chr9 17071304 17080301 +
Seca Seca8g01208 Chr8 18692963 18701393 +
Ssu Ssu6g2839 Chr6 65780741 65788647 -
Sto Sto9g2363 Chr9 26842598 26845455 -
Vian Vian7g01720 Chr7 26990378 26995498 +
Vifa Vifa1g01700 Chr1 278934235 278939144 +
Vimu Vimu1g01152 Chr1 8860597 8865506 +
Viun Viun8g02100 Chr8 31396868 31402401 -
Vra Vra6g0755 Chr6 7327433 7332087 +
Vvi Vvi4g0888 Chr4 13462780 13463289 +
Vvi Vvi4g0889 Chr4 13491476 13495416 +
Vvi Vvi4g0890 Chr4 13503053 13503370 +
Vvi Vvi4g0891 Chr4 13511713 13532182 -
Bva Bva13g01365 Chr13 7131148 7134103 +
Vvi Vvi4g0892 Chr4 13533108 13535191 -
Vvi Vvi4g0893 Chr4 13551717 13552391 -
Aed Aed3g2007 Chr3 24132233 24133373 +
Bva Bva13g01363 Chr13 7110902 7111970 -
Cca Cca05g01417 Chr05 32611393 32612042 +
Lasa Lasa2g01489 Chr2 461423069 461423727 -
Mepo Mepo7g02068 Chr7 30966721 30968019 +
Mesa Mesa17g03417 Chr17 60186269 60186975 +
Phac Phac8g03184 Chr8 40292378 40294301 -
Phco Phco3g00548 Chr3 4259032 4259692 +
Pste Pste8g01523 Chr8 8509892 8511015 -
Pumo Pumo9g02499 Chr9 59687876 59689245 -
Pvu Pvu8g2474 Chr8 55351566 55352666 -
Rops Rops9g01040 Chr9 17059560 17060232 -
Seca Seca8g01202 Chr8 18655737 18657412 -
Ssu Ssu6g2840 Chr6 65838414 65839072 +
Sto Sto9g2366 Chr9 26854298 26854980 +
Vian Vian7g01719 Chr7 26980201 26980861 -
Vifa Vifa1g01697 Chr1 278113257 278113915 -
Vimu Vimu1g01151 Chr1 8843107 8843767 -
Viun Viun8g02102 Chr8 31408142 31409321 +
Vra Vra6g0754 Chr6 7317350 7318402 -