Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2839 ATGGAGATACAGACTTGTGGCAAGCCAATTGATTCCTTGCTAGAGAAAGTGCTTTGCATGAATATTCTGTCGTCTGATTACTTCAAGGAGCTCTATCGTTTAAAAACGTATCACGAAGTTATTGATGAGATCTACAATCAAGTTGATCACGTGGAGCCGTGGATGACGGGGAATTGTCGCGGTCCTTCAACTGCTTTCTGTCTTCTGTACAAGTTTTTTACAATGAAGCTCACCGTCAAGCAAATGCACGGGCTGTTAAAACACCTGGATTCTCCTTACATAAGAGCGGTTGGATTTCTCTATCTGAGATATTGTGCTGATCCGAAGACACTATGGAATTGGTTTGAGCCATATATAAAAGATGACGAGGAATTTTCTCCTGGATCTAATGGGCGAATGACTACAATGGGTGTATATGTCCGTGATTTGCTTCTTGGACAGTATTACTTCGACACACTGTTTCCTCGCATCCCTGTTCCTGTATTGCGGCAAGTTGTGTCTAATCTTGAAAAGTTGAAACTCCCCGCTACACATTCTGGTTCAACAGGGGAATCCACCCGTCACGGTTCTGATGATACTGCCCGTAGACCACCTTCTGTTAAAGCTGCACTTTCAGTCTCTTTTGGTCAGCGGGCTCCACATCGTGCCTCCACAAGGGATTCTTCACCTATTCGACGTACATTACCTTCTCATGAAAGAAATGGCAATGATGACATAAGAAGATCTCCAAGTAGTCGCCGCAGCCAGAGCCGTGAATATCCTGATAGGGATAGGGACCGAGACCGATCGCAGTCCAGAGACAGGGATCGGGACCGTGATAGGGACAGGGATAGGGAACGTGATAAGGACAGGGATCGGGAACGTGATAGGGACAGATATCGTGACCGAGATAGGAACAGGGAATGGGAGCGAGACCGAGACCGTGACCGTGAAAGATACAGGGACCATGACTTGGACAGAGATCAGGAGAGGGACAGAGTCAGGAAGGATAAGGAgcgggaaagagagagagagaggagttATGATTATGACAGGAGGTCTAAGTATACAGAGAGAGAAAGCAGCCGGGATTATGACAATGGTAGTAGGCACTATCGTAGGAGCAGAAGTCGAAGTCGAAGTAGGAGCAGGAGTAGAAGTCGGAGCCTGCAAGCTGGTACTGCACAGTATGAATTGCGCTCTAGTCCACAGAGAGATGGGAGTAAGAGAGCTTCTGCATCCAGTAATCTAGCTAAACTGAAAGATATGTATGGTGATTTAGGGGACAATAAAGGAGATGCCAACGTGGAAAGAATTCCTAGAAAGGATAGTGGAGGCGAAGAGGTTATTAGACTTGGCGGGTCTTCTTGGAAGTATTGA 1359 0.4555 MEIQTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHLDSPYIRAVGFLYLRYCADPKTLWNWFEPYIKDDEEFSPGSNGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPATHSGSTGESTRHGSDDTARRPPSVKAALSVSFGQRAPHRASTRDSSPIRRTLPSHERNGNDDIRRSPSSRRSQSREYPDRDRDRDRSQSRDRDRDRDRDRDRERDKDRDRERDRDRYRDRDRNREWERDRDRDRERYRDHDLDRDQERDRVRKDKERERERERSYDYDRRSKYTERESSRDYDNGSRHYRRSRSRSRSRSRSRSRSLQAGTAQYELRSSPQRDGSKRASASSNLAKLKDMYGDLGDNKGDANVERIPRKDSGGEEVIRLGGSSWKY 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2839 452 MobiDBLite consensus disorder prediction 417 441 - -
Ssu6g2839 452 MobiDBLite consensus disorder prediction 218 290 - -
Ssu6g2839 452 MobiDBLite consensus disorder prediction 379 408 - -
Ssu6g2839 452 MobiDBLite consensus disorder prediction 319 452 - -
Ssu6g2839 452 PANTHER UNCHARACTERIZED 310 451 IPR005037 -
Ssu6g2839 452 PANTHER PRP38 FAMILY PROTEIN 1 313 - -
Ssu6g2839 452 Pfam Pre-mRNA-splicing factor 38-associated hydrophilic C-term 187 272 IPR024767 -
Ssu6g2839 452 MobiDBLite consensus disorder prediction 319 365 - -
Ssu6g2839 452 Pfam PRP38 family 11 161 IPR005037 -
Ssu6g2839 452 PANTHER UNCHARACTERIZED 1 313 IPR005037 -
Ssu6g2839 452 PANTHER PRP38 FAMILY PROTEIN 310 451 - -
Ssu6g2839 452 MobiDBLite consensus disorder prediction 176 290 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2839 K12850 - gmx:100788237 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2839 6 65780741 65788647 Ssu6g2839 6 65780741 65788647 ECH