Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1698 ATGTTACAACCTTCAGGCATGGCAGGAGAATCTGGTATGTTTACGGTTCATCAAACAGTTGGTAGTGTTTTGTGTTGCAAATGTGGAATTCCCATGCAACCAAATGCTGCCAACATGTGTGTGAAGTGTTTGCGCTCAGAAGTTGATATCACTGAAGGATTACTGAAGCATCTCATCCTAGTGCATTGCCCTGAGTGTGATAGCTACTTGCAGCCACCAAGAACCTGGGTCAAAGCACAATTGGAATCAAAGGAGCTGCTAACATTTTGTTTGAATAAACTGAAAAGGAATTTTAGTTCAAATAAAGTGAGGTTAGTACATGCTGAATTTATATGGACTGAGCCCCACTCCAAGAGGATAAAAGTCAAGGTTAAAATTCAGAAAGATGTTCTAAATGGAGCAATTCTTGAACAGTCTTATCCCATTGAGTATGTTCAACAGGAACATATGTGTGAATCCTGTTCTAGGATACAAGCTAACCCTGACCAGTGGGTTGCTGCTGTGCAACTACGGCAACATGTTACTCATAGGCGTACTTTCTTCTATTTAGAACAGCTGATTCTGAAGCATGGTGCTGCTGCTACTGCTATTAGAATACAGCAGATGGATCAAGGTATTGACTTCTTTTTCTCTAATCGAAGTCATGGTGTGAAATTTGTGGAGTTTATAGGGAAAGTTGCACCAGTTAGGAGCCGCCATGATAAACAACTTGTTTCTCATGATTCTAAGAGTAATAACTACAATTACAAATATACATTTTCTGTTGAAATCTCCCCCATTTGCCGTGAGGATTTAATTTGTCTGCCTCCTAAAGTTGCGGTTAGTTTGGGAAACCTTGGCCCTCTTGTGATTTGTACTAAAGTCACCAACAGCATTGCTTTACTTGATCCATTTACGCTGCGGCACTGTTTCTTGGATGCCGATCAGTACTGGAGGGCATCCTTTAAGTCTTTACTTACTAGCAGACAGCTAGTGGAATATATTGTGCTAGATGTGGAGACAGTTTCTTCTGAAGTTACCATTGGTGGCACGAAATATGTTTTAGCAGATGCTCAAGTGGCCCGTGTGTCTGATTTTGGGAAGAATGATACAATATTTTCCATCAGGACTCATCTAGGTCATCTTTTAAATCCTGGTGATTATGCTCTTGGTTATGACTTATATAGTGCTAACCATAATGACATTGAACTAGATAAGTACAGAGGACTTGTCCTTCCGGAGGCCATTTTAGTGAAGAAAAGCTATGAAGAGAAGCGCCAGAGGAAGCGGGGGAAGCCTCGTTCCTGGAAACTTAAATCCCTTGAAATGGAAGTTGATGATAAGGGTAAAGTTGACCAAGAAAAGATGAACTCAGAATATGAACAATTCTTGAgagatctggaagaaaatcctGATCTGAGGTTCAACATATCATTGTACCGAAACAAGGAATATCAGCCATCTGAGATGGCATCAGTGACTGATGGTGAAGATGTACCTTCTATTCCAGTGGACGAGTTGCTGGCTGATCTTGATCTGAATGACGATGAAGATGGAGAGGATAGCATGACGGAGTGA 1557 0.4046 MLQPSGMAGESGMFTVHQTVGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLLKHLILVHCPECDSYLQPPRTWVKAQLESKELLTFCLNKLKRNFSSNKVRLVHAEFIWTEPHSKRIKVKVKIQKDVLNGAILEQSYPIEYVQQEHMCESCSRIQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHGAAATAIRIQQMDQGIDFFFSNRSHGVKFVEFIGKVAPVRSRHDKQLVSHDSKSNNYNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNSIALLDPFTLRHCFLDADQYWRASFKSLLTSRQLVEYIVLDVETVSSEVTIGGTKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANHNDIELDKYRGLVLPEAILVKKSYEEKRQRKRGKPRSWKLKSLEMEVDDKGKVDQEKMNSEYEQFLRDLEENPDLRFNISLYRNKEYQPSEMASVTDGEDVPSIPVDELLADLDLNDDEDGEDSMTE 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1698 518 PANTHER 60S RIBOSOMAL EXPORT PROTEIN NMD3 7 514 - -
Sto5g1698 518 Coils Coil 443 463 - -
Sto5g1698 518 Pfam NMD3 family 25 257 IPR007064 -
Sto5g1698 518 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 7 514 IPR039768 GO:0043023
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1698 Sto-Chr5 12164102 12165658 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1698 K07562 - gmx:100799026 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1698 5 12164102 12165658 Sto5g1698 5 12164102 12165658 ECH